Panicum virgatum (switchgrass): 120693445
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Entry
120693445 CDS
T07260
Name
(RefSeq) probable indole-3-acetic acid-amido synthetase GH3.8
KO
K14487
auxin responsive GH3 gene family
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120693445
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Motif
Pfam:
GH3
GH3_C
GH3_M
Motif
Other DBs
NCBI-GeneID:
120693445
NCBI-ProteinID:
XP_039832815
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Position
2K:complement(62812477..62814876)
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AA seq
608 aa
AA seq
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MAVMAEVSTTTGAALRSPASPAPVKEGDAEKLWFIEEMTSDVDAVQERVLAEILARNADT
EYLTNCGLAGATDRATFRAKVPMATYEDLQPYIRRIADGDRSPILSGHPVSEFLTSSGTS
AGERKLMPTIEDELNRRQLLYSLQMPVMNLYVPGMDKGKALHFLFVKSETRTPGGLAARP
VLTSYYKSNHFKNRPFDAYNNYTSPTAAILCADAFQSMYAQMVCGLVQRHDVLRVGAVFA
SGLLRAIRFLQLNWEQLAADIETGALTPRVADPSVREAVAGLLRPDPELAAVIRAECSSG
DWAGIITRIWPNTKYLDVIVTGAMAQYIPTLKYYSGGLPMACTMYASSECYFGLNLRPMC
DPSEVSYTLMPNMCYFEFLPMDAAASGGDARQLVDLARVELGREYELVITTYAGLNRYRV
GDVLQVTGFHNSAPQFRFVRRKNVLLSIESDKTDEAELQRAVERASALLRPHGAAVVEYT
SQAYTKSIPGHYVIYWELLAKTPADGEAVDRETLDQCCLQMEEALNSVYRQSRVADGSIG
PLEIRVVRSGTFEELMDYAISRGASINQYKVPRCVTFPPIIELLDSRVVSSHFSPALPHW
TPGQRNDD
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgatggccgaagtgtccacgaccaccggtgcggcactccgcagcccggcctcg
ccggcgccggtgaaggagggcgacgccgagaagctctggttcatcgaggagatgacctcc
gacgtggacgccgtgcaggagcgcgtcctggcggagatcctggcccgcaacgccgacacc
gagtacctcaccaattgcggcctcgccggcgccaccgaccgcgccaccttccgcgccaag
gtgccgatggcgacgtacgaggacctgcagccgtacatccggcgcattgccgacggcgac
cgctcgcccatcctgtccggacaccccgtctccgagttcctcaccagctccggcacgtcc
gccggcgagcgcaagctcatgcccaccatcgaggatgagctcaaccgccgccagctcctc
tacagcctccagatgcccgtcatgaacctgtatgtgcctgggatggacaaggggaaggct
ctccatttcctcttcgtcaagtcggagaccaggacgccgggcggcctcgcggcgcggccg
gtgctgaccagctactacaagagcaaccacttcaagaaccgcccgttcgacgcctacaac
aactacacgagccccacggcggccatcctctgcgccgacgcgttccagagcatgtacgcg
cagatggtgtgcggccttgtccagcgccacgacgtgctgcgcgtcggcgccgtgttcgcg
tccggtctcctccgggccatccgtttcctgcagctcaactgggagcagctcgccgcggac
atcgagaccggcgcgctcaccccgcgcgtcgccgacccgtcggtgcgcgaggccgtcgcg
ggcctcctccgcccggaccccgagctcgccgcggtgatccgcgccgagtgctccagcggc
gactgggcaggcatcatcacccgcatttggcccaacaccaagtacctcgacgtcatcgtc
accggcgccatggcgcagtacatcccgacgctcaagtattacagcggcgggcttcccatg
gcgtgcaccatgtacgcgtcgtcggagtgctactttggcctgaacctccggcccatgtgc
gacccctcggaggtgtcctacaccctgatgcccaacatgtgctacttcgagttcctgccc
atggacgccgcggcgtcgggcggcgacgcgcgccagctggtggacctcgcccgcgtggag
ctcgggcgcgagtacgagctggtgatcaccacgtacgccgggctgaaccggtaccgcgtc
ggcgacgtcctccaggtgaccgggttccacaactcggcgccgcagttccggttcgtgcgc
cgcaagaacgtcctgctgtccatcgagtccgacaagacggacgaggcggagctgcagcgc
gccgtggagcgcgcgtccgcgctgctccgcccgcacggcgccgccgtggtggagtacacc
agccaggcctacaccaagagcatccccggccactacgtcatctactgggagctgctcgcc
aagacccccgccgacggcgaggcggtggacagggagacgctggaccaatgctgcctccag
atggaggaggcgctcaactcggtgtaccggcagagccgcgtggcggacggctccatcggg
ccgctggagatccgggtggtccggtcgggcaccttcgaggagctcatggactacgccatc
tcccgcggcgcgtccatcaaccagtacaaggtgccccggtgcgtgacgttcccgcccatc
atcgagctgctggactcgcgcgtcgtgtccagccacttcagccccgcgctgccgcactgg
acccccggccagcgcaacgacgactag
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