Panicum virgatum (switchgrass): 120693470
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Entry
120693470 CDS
T07260
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120693470
09122 Translation
03013 Nucleocytoplasmic transport
120693470
03015 mRNA surveillance pathway
120693470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120693470
03041 Spliceosome [BR:
pvir03041
]
120693470
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120693470
Spliceosome [BR:
pvir03041
]
Complex C
Other components
EJC/TREX
120693470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
DUF3232
Motif
Other DBs
NCBI-GeneID:
120693470
NCBI-ProteinID:
XP_039832850
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All DBs
Position
9N:61744796..61749500
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AA seq
701 aa
AA seq
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MSSYPVLNNRPIDQWRVTDLKDELRKRRLPVKGLKEELVRRLFESIQSEKAADEADEDAG
ANADDQLPDANASEQTTVTITEVHHETVVHVSQQVEVPIPSVDVEASLNETSAAKGEEPE
SIDGGNLAFEEVQPHTESNNEPILEKTSDAETNEAVIVNDAISNEVKSDLATSEIKSDAT
KATKIQEHESAPAPADASHMDTDVVTAAPVSDDGEKLAPMDDLGGKVPMYDEEHKDSDIM
NEEREPIVSKPNNQVPEVSPDLGSQIKCESISSDLSTNKKNNIEDNLNANNFDLELEIKP
KMVEPSSGITSLGGDLQQLDDDKELVKNQSSVEDIDSIANVDSYKKDSPEGSPEKLNLDR
SSGDESMEEDVMEIKQVESNMKSDEKTEINSEDEKEVTLPDSAVEASSVDTKEVIAEEKS
AASTEKRKFEAEEVVAITEPIKRQRRWTADGAKVPEKQTSSQTVSDAPKDVFQPALKRSF
GRSDSTASVDSPKERIVPPSQKPATTSLRIDRFVRPFTLKAVQELLGKTGSVQNFWMDHI
KTHCYVTFSSVDEAVATRDAVYNLQWPPNNGNKLIAEFVDPQEVKLKVEPPPPPAAPVSP
AAARVPPVQQAQANQNAPRQAATPKEQLPPPPPLAKPPVAADPAASARERLPPTPKKPEP
PVVTLDDLFRKTQSSPRIYYLPLSEEEVAAKLAAQGKGKKE
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatatcctgtgctaaacaaccgaccaattgatcagtggagagttactgatctg
aaggatgaactccgtaaaagaaggcttcctgttaagggtttgaaagaggaacttgtgagg
cgactttttgaatccattcagagtgaaaaagcagctgatgaagctgatgaagacgcggga
gcgaatgcagatgatcagttgcctgatgccaatgctagtgaacaaactacagttaccatc
acagaagttcatcatgaaacagtggttcatgtcagtcagcaagttgaagttcctatcccc
agtgttgatgttgaagcttccttaaatgagacctcagctgccaaaggagaagaacctgaa
tcaattgatggaggaaatttagctttcgaagaagtgcaaccgcatactgaaagtaataat
gagcctattcttgagaagacctcagatgctgaaaccaatgaggcagtcatagtcaatgat
gcaatcagtaatgaagtgaagtcagacttggccacttctgaaatcaagtctgatgccact
aaagcaaccaaaattcaagaacatgaatcagcaccagcacctgcagatgctagccatatg
gataccgatgttgtcacagctgcaccagtaagtgatgatggggagaaactggcacccatg
gatgatttgggtggcaaagtgccaatgtatgatgaagaacacaaagattctgatatcatg
aacgaggaacgcgagcccatcgtgtcaaaaccaaataatcaggtacctgaggttagccca
gatttagggtctcaaattaagtgtgagtcgatttctagtgatctatcaactaacaaaaag
aataatatagaagataacttgaatgctaataattttgatttagaactagagattaagccg
aagatggttgaaccatcatccggcattacttccttaggtggagatttgcagcaattggat
gatgacaaagagctggttaagaaccagtcatctgttgaagacatagattccatcgctaat
gtggactcatacaagaaagatagtcctgaaggttctccagagaaattaaatttagacagg
agttcaggtgatgagtcaatggaggaggatgttatggaaattaaacaagttgagtccaat
atgaaatctgatgaaaagactgagattaactcagaagatgagaaagaggtgaccctccct
gattctgctgttgaggcttcctctgttgataccaaggaggttatagctgaagaaaagtca
gcagcttcaacagaaaaaagaaaattcgaagctgaagaagttgttgcaatcactgaacca
ataaagcggcagcgccgatggactgcagatggtgccaaagttccagagaaacaaacatca
agtcaaactgtttctgatgctcccaaggatgtttttcagcctgctcttaaacgatctttt
gggaggtctgattcaacggctagtgtagattctcctaaggagcggattgtgccaccgtct
cagaaacctgcaacaacttctttgagaattgaccgatttgtacgcccatttactctgaaa
gctgtgcaggagcttcttggtaaaactggatcagtacaaaacttctggatggatcatatc
aagactcattgctatgttacattttcctcggttgatgaagctgtggccactagggatgct
gtttacaacctacagtggcccccaaacaatggcaataagttgattgccgaatttgttgat
cctcaggaagtgaagctcaaggttgagccccctcccccgcctgcagctcctgttagccca
gctgctgcaagggtgcctcctgttcaacaggctcaggctaatcaaaatgcgccacgccaa
gctgctacaccgaaggagcaactgccacctccaccgccccttgctaagccccctgtggct
gctgacccagcggcatcagcaagggagaggttaccacccactccaaagaagccagagcct
cctgttgtgacactcgatgatctctttaggaagacacagtcatccccgaggatctactac
ctgcctttgtcagaagaggaggtggcagccaagctcgccgcacaagggaaagggaaaaag
gaatag
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