KEGG   Panicum virgatum (switchgrass): 120693510
Entry
120693510         CDS       T07260                                 
Name
(RefSeq) ubiquitin-40S ribosomal protein S27a-like
  KO
K02977  ubiquitin-small subunit ribosomal protein S27Ae
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03010  Ribosome
pvir04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    120693510
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    120693510
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:pvir03011]
    120693510
   04121 Ubiquitin system [BR:pvir04121]
    120693510
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pvir04147]
    120693510
Ribosome [BR:pvir03011]
 Ribosomal proteins
  Eukaryotes
   Small subunit
    120693510
  Archaea
    120693510
Ubiquitin system [BR:pvir04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   120693510
Exosome [BR:pvir04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   120693510
  Exosomal proteins of colorectal cancer cells
   120693510
SSDB
Motif
Pfam: ubiquitin Ribosomal_S27 Rad60-SLD Ubiquitin_2 Rad60-SLD_2 TBK1_ULD Dsc3_N DUF2604 DUF8007 C2CH-3rd_BIRD-IDD Ubiquitin_5 UBL_UBAC1
Other DBs
NCBI-GeneID: 120693510
NCBI-ProteinID: XP_039832901
LinkDB
Position
9N:complement(21961253..21961993)
AA seq 162 aa
MQIFVKTLTGKTITLEVESSDTVANVKAKVQDKEGIPPDQQRLIFAGKQLEDERTLADYN
IQKESTLHLVLRLRGGGKKRKKKTFTTPKKAAHEHRSVGLTGVLGRYRVDEAAGKVERLR
RECPNPECGPGTFMAAHADRHACGRCGLTYAVESRSAAELAN
NT seq 489 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtgaagacgctgacgggcaagacgatcacgctggaggtggagtcgtcg
gacacggtggcgaacgtgaaggccaaggtgcaggacaaggagggcatcccgccggaccag
cagcggctcatcttcgcggggaagcagctggaggacgagcgcacgctggccgactacaac
atccagaaggagtcgacgctgcacctggtccttcgcctccgcggaggcggcaagaagcgc
aagaagaagacgttcaccacgcccaagaaggccgcccacgagcacaggagcgtggggctc
accggcgtgctcgggaggtaccgggtcgacgaggcggcggggaaggtggagaggctgcgc
agggagtgccccaacccggagtgcgggcccgggacgttcatggcggcgcacgccgaccga
cacgcctgcggcaggtgcggcctcacctacgccgtcgagagccggagcgcggcggagctg
gccaattag

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