Panicum virgatum (switchgrass): 120694041
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Entry
120694041 CDS
T07260
Name
(RefSeq) clathrin heavy chain 1-like
KO
K04646
clathrin heavy chain
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04142
Lysosome biogenesis
pvir04144
Endocytosis
pvir05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120694041
04142 Lysosome biogenesis
120694041
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
120694041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120694041
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120694041
Membrane trafficking [BR:
pvir04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
120694041
Exosome [BR:
pvir04147
]
Exosomal proteins
Proteins found in most exosomes
120694041
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
Motif
Other DBs
NCBI-GeneID:
120694041
NCBI-ProteinID:
XP_039833153
LinkDB
All DBs
Position
Unknown
AA seq
1710 aa
AA seq
DB search
MAAANAPIAMREALTLTSLGIAPQFVTFTHVTMESEKYICVRETSPQNSVVIIDMAMPMQ
PLRRPITADSALMNPNTRILALKAQIPGTTQDHLQIFNIEAKTKIKSHQMPEQVVFWKWI
TPKLLGLVTQTSVYHWSIEGDSEPTKMFDRTANLANNQIINYRCDPAEKWLVLIGIAPGA
PERPQLVKGNMQLFSVDQQRSQALEAHAASFATFKVVGNENPSTLICFASKTTNAGQITS
KLHVIELGAQPGKPGFSKKQADLFFPPDFQDDFPVAMQVSQKYGLIYVITKLGLLFVYDL
ETAAAVYRNRISPDPIFLTAESSSTGGFYAINRRGQVLHATVNDATVVPFVSGQLNNLEL
AVNLAKRANLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPETVAKFQSVPVQ
AGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLDNWLAEDKLECSEELGDLV
KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQ
GAVNFALMMSQMEGGCPVDYNTITDLFLQRNMIREATAFLLDVLKPNLPEHAFLQTKVLE
INLVTYPNVADAILANGMFSHYDRPRIAQLCEKAGLYLRALQHYSELPDIKRVIVNTHAI
EPQALVEFFGTLSREWALECMKDLLLVNLRGNLQIVVQAAKEYSEQLGVDACIKLFEQFK
SYEGLYFFLGSYLSSSEDPDIHFKYIEAAARTGQIKEVERVTRESNFYDAEKTKNFLMEA
KLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPE
DFIKGLILSVRSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS
NNNPEHFLTTNPFYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARY
VVERMDGDLWDKVLQPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE
LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYE
EAFAIFKKFNLNVQAVNVLLDNIRSIERAEEFAFRVEEDAVWSQVAKAQLREGFVSEAIE
SFIRADDAAHFLDVIRAAEVANVYNDLVKYLLMVRQKAREPKVDGELIFAYAKIDRLSDI
EEFILMPNVANLQNVGDRLYDEELYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARK
ANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGCFNELIALMESG
LGLERAHMGIFTELGVLYARYRSEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYI
QYDEFDNAATTIMNHSPDAWDHMQFKDVCVKVANVELYYKAVHFYLQEHPDLINDMLNVL
ALRLDHTRVVDIMRKAGQLHIVKPYMVAVQSNNVSALNEALNELYVEEEDYERLRESVDM
HDNFDQIGLAQKLEKHELLEMRRIAAYIYKKAGRWKQSIALSKKDNMYKDCMETCSQSGD
RELSEDLLVYFIEQEKKECFASCLFICYDLIRPDVALELAWMNNMVDFAFPYLLQFIREY
TSKVDDLVKDKIESQNEERAKEKEEKDLVAQQNMYAQLLPLALPAPPMPGMGGPPPPMGG
MGMPPMGGMGMPPMGPGPMPAFGMPPMGSY
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccaacgcccccatcgccatgcgcgaggcactcacgctcaccagcctgggc
atcgccccgcagttcgtcaccttcacccatgtcaccatggagtcggagaagtacatctgc
gtccgcgagacctccccgcagaacagcgtcgtcatcatcgacatggccatgcccatgcag
ccgctccggcgccctatcaccgccgactcggcgctcatgaaccctaataccagaatcctc
gcgctcaaagcccaaatacctggaacaacacaggatcaccttcaaatattcaatattgag
gctaagactaagataaagtctcatcagatgccagagcaggttgtgttttggaaatggatc
actcccaagttgttgggtttagtaacacaaacatcagtttatcactggtcaattgaaggt
gattctgagcccaccaagatgtttgataggacagctaatctggcaaacaaccagatcatc
aactaccgatgtgacccggctgagaagtggcttgtgcttattgggattgcacctggtgcc
ccggagaggccacagctggtgaagggaaatatgcaacttttttctgttgatcagcagcgt
agccaggcacttgaagcccatgcagcatcttttgcaacatttaaggttgttggtaatgag
aacccatcaacccttatttgtttcgcctcgaagacaactaatgctggacagatcacttca
aagttgcatgttattgaattgggcgcccagccagggaaacctggcttttctaagaaacaa
gccgacctcttcttcccacctgatttccaggatgattttcctgtagctatgcaggtttca
caaaagtatgggcttatctatgtaattacaaagcttggccttttgtttgtttatgatttg
gaaactgcagcagcagtgtacagaaatagaattagtccagaccctatattcttgacagca
gaatcttcctcgactggtggattttatgccatcaacagaagagggcaggttttacatgcc
acagttaatgatgcaactgttgtgccttttgtcagtggtcaattaaacaatcttgagcta
gctgtgaatcttgccaagagagccaatcttcctggtgcagagaacttggttgtgcaaaga
ttccaggaactgtttgcacagacgaaatacaaggaagcagctgagctggccgcagaatct
cctcaaggcctcctgagaacacctgagactgttgctaagtttcagagtgttcctgtgcaa
gctgggcaaacacccccactgttgcagtactttggtacattgctaactcgtgggaagctc
aacgcctttgagtctcttgagctatctcgacttgtcgtcaatcagaacaaaaagaacctt
ctggataattggttggcagaagacaagctagagtgcagtgaagaacttggagatcttgtc
aagactgtggacaatgatcttgccctaaaaatatacataaaggctagggcaacccctaaa
gttgttgcagcttttgctgaaaggagggagtttgacaagattcttatatactcaaagcag
gttgggtacactccagattatctcttccttctccagactattttgcgtacagatccacag
ggagctgtgaactttgctctcatgatgtcacaaatggaaggtggttgtccagtagattat
aatactattactgatcttttccttcagaggaatatgatacgggaggcaacagcttttttg
ttggatgttctgaaaccaaacttgccagagcatgcttttcttcaaaccaaggttttggag
ataaacttggtgacatacccaaatgttgctgatgccattcttgctaatggcatgttcagt
cattacgaccgccctcgtattgctcagctgtgtgaaaaagcaggcttgtacttgcgtgct
ctccagcattactcagagctacctgatatcaagcgtgtcatcgtcaatacccatgccatt
gagccacaggcactcgttgagttctttggcaccctgtcaagagagtgggccttggagtgc
atgaaggaccttctactggtcaatctgaggggaaatcttcaaatcgttgtgcaggctgca
aaagaatactctgagcagctaggagttgatgcttgcataaaactatttgagcaatttaaa
tcttacgagggcctttactttttcttgggatcctatttgagctccagcgaggacccagat
atccatttcaaatacattgaagcagctgccaggactggacagatcaaagaagtggaacgt
gtaaccagagagtccaacttctatgatgctgagaagacaaagaacttcttgatggaagca
aaactacctgatgcccgcccactgattaatgtttgtgaccgctttggttttgtgccagat
ctcactcactatctgtacacgaacaacatgcttcggtatatcgaaggctatgtacagaaa
gtgaatcctgggaatgctcccttggtagtgggccaactacttgatgatgagtgccctgaa
gattttattaagggtttgattctctctgttcgttccctccttcctgttgagccactggtt
gatgaatgcgagaagaggaaccgcctacgtttgctcactcaattcttggagcacttagtg
agcgaaggtagccaagatgtgcatgtccacaatgctcttgggaaaataatcattgacagc
aacaataatcccgagcatttccttactaccaacccattttatgactcgcgtgttgtgggt
aaatactgtgaaaagcgggatcctacacttgctgttgttgcttacaggcgtgggcagtgt
gacgatgaacttattaacgtcactaacaaaaactcattgttcaagctgcaagccagatat
gttgttgagagaatggatggtgatctgtgggataaagttcttcagcctgagaatgaatat
agaaggcagctcattgaccaggtggtttcgactgcattacctgagagcaagagcccagag
caagtgtctgctgctgttaaggctttcatgactgctgaccttcctcatgaattgattgag
cttcttgaaaagattgttcttcagaattctgcgttcagtggaaatttcaatctgcagaac
ctgctcatcttgactgcaatcaaggcggacccatcgagagtcatggactatgtgaacaga
cttgacaactttgatgggcctgctgttggagaagttgctgttgaagcacaattgtatgaa
gaggcttttgctatattcaagaagttcaacttaaatgtgcaggctgtcaatgttctcttg
gacaacatccgaagcattgaaagagctgaggagtttgctttccgtgttgaagaagatgct
gtttggagccaggttgccaaggcccagttacgtgaaggtttcgtcagcgaagcaattgag
tccttcatccgtgcagatgatgcggcacatttcctcgatgtcatccgtgctgcggaggta
gccaatgtgtacaatgatttggttaagtatcttctgatggtaaggcaaaaggcaagggag
cccaaagttgatggagaactcatctttgcatatgctaagattgatagactcagtgatatt
gaagagttcattcttatgccaaatgttgccaacctccaaaatgttggtgatcgtttgtat
gatgaagagctatatgaagctgcaaagatcatctatgccttcatctcaaactgggctaag
ctggctgttaccctggttaagctgaagcagttccaaggtgctgtggatgctgctcgtaag
gctaacagcgcgaaaacatggaaagaggtctgctttgcttgtgttgatgcagaggagttc
cgtcttgcacagatatgtggtctaaatattattgtccaggttgatgacttagaagaagtg
agtgaatactaccagaatagaggatgcttcaatgaacttattgctctcatggagagtggt
cttggacttgaacgtgcacacatgggcatcttcacagaactgggagttctgtatgctaga
taccgatctgagaagcttatggagcacatcaaacttttctccacccgtctcaacattcct
aagcttatccgggcttgcgatgaacagcaacactggaaagaacttacctacctgtacatt
cagtatgatgaatttgacaatgctgccaccactatcatgaaccactctccagatgcatgg
gatcatatgcagttcaaggatgtttgtgttaaagttgcaaatgttgaactgtattacaag
gcagttcacttctatttgcaagagcaccctgatctcatcaatgatatgctaaatgtgctt
gcgctccgtttggatcataccagagttgtagacataatgcgcaaggctggtcagctgcat
attgtgaagccttatatggttgcagttcagagcaacaatgtctctgctttgaatgaagca
ttgaatgagctttatgttgaagaggaagactatgagagactccgggaatcagttgacatg
cacgataactttgatcagataggtcttgcccagaagcttgagaaacatgaattgcttgag
atgaggaggattgctgcctacatctacaaaaaggctggcagatggaagcaatccattgct
ctatcaaagaaagacaacatgtacaaggattgcatggagacatgctcgcagtctggtgac
cgcgaactatcagaggacttgcttgtctatttcatcgagcaggaaaagaaagaatgcttt
gcatcttgcctcttcatttgttacgacttgatccggcctgatgttgcccttgagcttgca
tggatgaacaacatggtggactttgccttcccatatctcttgcagttcattcgtgaatac
accagcaaggttgatgatttagtcaaggacaaaattgagtcacaaaatgaggaaagagcc
aaagagaaggaggagaaagatcttgttgcccagcagaacatgtatgcccagctgcttccg
cttgctttgcccgctccgccgatgcctggcatgggtggacctccacctccgatgggtgga
atgggcatgcctccaatgggtggaatgggtatgcctccgatgggtcctggtccgatgcca
gcatttgggatgccaccaatgggaagctactag
DBGET
integrated database retrieval system
