Panicum virgatum (switchgrass): 120694129
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Entry
120694129 CDS
T07260
Name
(RefSeq) eukaryotic translation initiation factor 5B-like
KO
K03243
translation initiation factor 5B
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
pvir03012
]
120694129
Translation factors [BR:
pvir03012
]
Eukaryotic type
Initiation factors
eIF-5
120694129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
IF-2
GTP_EFTU_D4
MMR_HSR1
GTP_EFTU_D2
ATP_bind_1
Roc
Motif
Other DBs
NCBI-GeneID:
120694129
NCBI-ProteinID:
XP_039833233
LinkDB
All DBs
Position
Unknown
AA seq
894 aa
AA seq
DB search
MSSRTPTAGSRGAAGAGGGRKKQAAASGARPAPRQHVRMIQEHLARAREEERRAEEGRRE
EEARRAEEERRAREEAERRAEEERRAREERRRKRQEEARKRAEREEKRRMEDARRRLGIA
VPDAASGEGRHRRPVYESRKSKSQPKHQSGTNLGETHVIEKQLEDMQSNASLEDTDGVVV
DVLELSKEQITQPLSEDSSGIDDDDAWENKSFGEFDAQLCGDSPPFGEEEDERTEEKHVY
SAAPIADSMSLSDDMGEDVVSILQDDGSSNGIDRELRAPICCILGHVDAGKTKLLDCIRR
SNVQGGEAGGITQQIGATYLPVENIRERSSLKAEATIKVPGLLVIDTPGHQSFSNMRLRG
SSLCDIAVVVVDITRGLEKQTIESLDLLKHRNVRFIVALNKVDRLYRWKTCPNAPIAKAL
KSQSEDVQSEFKWRVTEVVTQLKENGFNAALYYENKRMKGVVNIVPTSAVSAEGIPDLLL
LLVRWVPEIMMERLTYANNVECTVLEVNEDKDFGTTIDVVLINGALRKGDQIVVCTKQGP
VTTNIRYLLTPYPMKELKAKGVYKHHEELKAAQGVKIAVRGLRHAIAGTALIVVKPGDDL
EQAEAAAVQEISNANSLFNEDERGEGNDGTAIEEISRIKTCKEGVYVQASSLGTLEAIIE
HLKTLSLDIPVGGCNLGPVHKQDVLKATAMLKRKEEYAAILAFDVKVMPEAFDLAAESGV
KIFMAHTVYKLVDSFTDHIKKLKEEKKKQYAAEAVFPCTLKVLPNHVYHKKDPIVCDVEV
LEGVVKVGTPICVSVPSKDRDADVVHSLGRISSMETSNGKPIDSAKKGVVSIKIIGENPQ
ERSRLYGRHFNADNELLSQISRKSIDVLEEYYQDEMTDENWQLIRRLEKQFGIL
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgaggacgcccacggcggggtcccgcggcgccgctggcgctggcggaggccgg
aagaagcaggcggcggctagtggcgcgaggccggcgccgaggcagcacgtccggatgatc
caagagcacctggcgcgcgcgcgcgaggaggagcggcgcgcggaggaggggcgccgggag
gaggaggcaaggcgcgccgaggaggagcgcagggccagggaggaggcggagaggcgcgcc
gaggaggagaggagggcgcgggaggagaggcggcgcaagaggcaggaggaggcgcggaag
cgggccgagcgggaggagaagcgccggatggaggatgcgcgaaggcggctcggcatcgcc
gtccctgatgccgccagcggtgagggtaggcacagaaggcccgtgtatgagtcgagaaag
tcaaaatcacagcccaagcatcaatctggaactaatttgggagaaactcatgtaattgag
aagcaattggaggacatgcagagcaatgcttccctggaagatactgatggagtagttgtt
gatgtgctggaattgagcaaggaacagattacccaaccattatcagaagatagcagtgga
atcgacgacgatgatgcttgggagaataagagctttggcgaatttgatgctcagttgtgt
ggtgattctcccccttttggagaagaggaagatgagcgaacagaggaaaaacatgtgtac
tctgctgctccgattgctgactcgatgagtttatctgatgatatgggggaagatgtggtc
tctatccttcaggatgatggttcaagcaatggcattgatagggagcttcgagcaccaata
tgttgtatccttgggcacgtggatgctggaaaaacaaagctgcttgattgcatccggcga
agcaatgttcagggtggagaggctgggggaatcacacagcagattggtgcaacctactta
ccagttgagaatatcagggagaggtcctccctgaaagctgaggccacaatcaaggttcct
ggtttgcttgtaattgacacccctggccaccagtcattcagtaacatgcgcttgagggga
tcaagtttgtgtgacattgctgtagtggttgttgatattacgcgtgggctggagaagcag
accattgagtcccttgatcttttgaaacaccgcaacgtgaggtttattgttgccttgaac
aaggttgatcggctgtataggtggaagacttgtcccaatgcaccaatagcaaaagcgctc
aagagccaatctgaagatgtccaaagcgaattcaaatggagggtaactgaggttgtaaca
caacttaaggaaaatggcttcaacgccgccctgtattatgaaaacaagaggatgaaagga
gtggtgaatattgtcccaactagcgctgtaagtgctgaaggcattccagaccttctgctg
ctgctggtgcggtgggtgccagaaataatgatggaaagactgacatatgccaataatgta
gagtgtactgtgctggaggtcaatgaagacaaagatttcggaactactattgatgtagtg
ctgattaatggtgcacttcgtaaaggtgatcaaatagttgtttgcaccaaacaggggcct
gtcacaaccaacataagatatttgttgacaccttatcccatgaaagaactgaaagctaag
ggagtatataagcatcacgaggagcttaaagctgcccaaggggtaaaaattgcagtgcga
ggactgcgacatgctatagcaggcactgctctcattgtggtgaaacctggggatgatctg
gaacaagctgaagccgctgcagtgcaagaaatcagtaatgccaacagcctgttcaatgag
gatgaaaggggtgagggtaatgatggaacagcaatagaagaaataagtaggatcaaaact
tgcaaggagggtgtctatgtgcaagcatctagtcttggaaccttggaagccattattgag
catttgaagaccctttctttggacattcctgttggtggttgcaacttaggcccagtgcac
aagcaggatgtcctgaaagcgactgctatgctgaagaggaaagaagagtatgcagccatc
ttggcctttgatgtcaaagtaatgcctgaggcttttgaccttgcagctgagtcaggggtg
aagatttttatggctcatacggtatacaagcttgttgacagctttactgatcacattaag
aaactgaaggaagagaagaagaagcaatatgcagctgaggcagtgttcccatgcaccctt
aaggttctgccaaaccatgtctaccataaaaaagatccaattgtttgtgatgttgaagtt
ttggaaggcgttgtcaaggtgggaaccccaatttgtgtctctgttccaagcaaggataga
gatgcagacgtggttcatagccttgggaggatatcttccatggaaacatccaatggaaag
ccgattgattctgccaagaaaggagtagtgtcgataaagataattggggagaaccctcag
gagaggtcccgattgtatggacgccattttaatgccgacaacgagctgctcagccaaatc
tctaggaaatctattgatgtgctggaagagtattatcaggatgagatgactgatgaaaat
tggcagctgatccgcaggctagagaagcaatttgggatactctga
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