Panicum virgatum (switchgrass): 120694540
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Entry
120694540 CDS
T07260
Name
(RefSeq) serine/arginine-rich splicing factor SC35-like isoform X1
KO
K12891
serine/arginine-rich splicing factor 2/8
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120694540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120694540
Spliceosome [BR:
pvir03041
]
Common components
Common spliceosomal components
SR proteins
120694540
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_5
Motif
Other DBs
NCBI-GeneID:
120694540
NCBI-ProteinID:
XP_039833622
LinkDB
All DBs
Position
2K:64531787..64535215
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AA seq
284 aa
AA seq
DB search
MSRFGRSGPPPIRDTYSLLVLNITFRTTADDLFPLFDKYGEVVDIYIPRDRRTGDSRGFA
FVRYKYEDEAQKAVDRLDGAPVLLTSGNRCLPSAGCDWIVVHFVRVLFAGRVVDGREIMV
QFAKYGPNAERINKGRIVEPLPRSRGRSRSHSPRRWYRDDYRDDYRDRDYRRRSRSRSRD
RYSRDSYRERDYRHRSRSRSPDGYKKHGRDSLSPPRRSPSRSRSRSRSYSPDDNKRRGRD
SSASPASRSPSRTPPCKTSPSPERSPVRREHNDDRSPRSRSPST
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgcttcgggcgatccggcccgccgccaatccgcgacacctactccctcctcgtc
ctcaacattaccttccgaacgaccgctgatgacctcttcccgctattcgacaagtatggc
gaggtcgtcgacatctacatccccagggaccgcaggactggtgactcccgagggttcgcg
ttcgtgaggtacaagtacgaggacgaggcgcagaaggcagttgataggctcgatggtgcg
cctgtgctccttacctctggaaatagatgtttgccatctgcggggtgtgattggattgtt
gttcacttcgtgcgtgttttgtttgcagggagagtggtagatgggagagagatcatggtg
cagtttgccaaatatggcccaaatgctgaacggattaataaagggagaatagtggagcca
ctaccaaggtcaagaggccgttccagaagccacagtccaagacggtggtaccgtgatgat
tatcgagatgattaccgggatagagattatagaaggcgaagtcggagtcggagtagagat
aggtattcacgtgacagttacagagagagggattatcgtcaccgtagcaggagtcgcagc
cctgatggttacaagaagcatgggagagacagtttgtctcctccacgtagaagtcctagt
cgtagccgaagccgaagtcgcagctacagtcctgatgataacaagaggcgtggcagagac
agcagtgcatcacctgcgagtaggagccctagccgcaccccaccttgcaagacatcacct
tctcctgagagatctcctgtcaggcgcgagcacaatgatgaccggtctccacgttctcgg
agcccttcgacatga
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