KEGG   Panicum virgatum (switchgrass): 120694679
Entry
120694679         CDS       T07260                                 
Name
(RefSeq) uncharacterized protein LOC120694679 isoform X1
  KO
K03873  elongin-B
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    120694679
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120694679
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120694679
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul2 complex
    Adoptor protein
     120694679
   Cul5 complex
     120694679
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     120694679
SSDB
Motif
Pfam: ubiquitin Rad60-SLD UCH_UBL1 YceG_bac
Other DBs
NCBI-GeneID: 120694679
NCBI-ProteinID: XP_039833806
LinkDB
Position
2K:65772901..65775780
AA seq 161 aa
MRCSELVPFSSLLALVSPAIDPRLVSVSRLLGVSLVNATAGARAHRRLRRPARRRTGGQI
GAPQLASMYIRVKRNKSTYFIQCEPTETTLSVKQKLHSLIDQPPSNQQLVLLATNDVLED
SKTLADQKVENDSVVALALRKDDDEFEEIFIARPEDFMSSS
NT seq 486 nt   +upstreamnt  +downstreamnt
atgcgttgcagcgaactcgttccgttctcatccctcctcgccttggtttcgccagccatc
gatccgcggctcgtgtccgtctcccggctcctcggcgtctcgctcgtcaacgccaccgcc
ggcgcacgagcccaccgtcgactccgcagacccgcgcgccgccgcacgggaggacagatc
ggcgctccgcagcttgcaagcatgtatatccgagtgaagcgcaacaagagtacctacttc
attcaatgtgaaccgacagagacaactttgagcgtcaaacagaagttgcattcactaata
gatcagcctcctagcaatcagcagttggtcttgttggctaccaatgacgtgctggaagat
tcaaagacattggcagaccaaaaggtggaaaatgattctgttgttgccttggcactgaga
aaagatgacgatgagtttgaggaaattttcatcgccaggccagaggatttcatgtcatct
tcatga

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