Panicum virgatum (switchgrass): 120694681
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Entry
120694681 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120694681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120694681
03009 Ribosome biogenesis [BR:
pvir03009
]
120694681
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120694681
Spliceosome [BR:
pvir03041
]
Complex A
U1 snRNP components
U1 related factors
120694681
Complex B
120694681
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Helicases
120694681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
120694681
NCBI-ProteinID:
XP_039833809
LinkDB
All DBs
Position
2K:65820467..65827741
Genome browser
AA seq
1366 aa
AA seq
DB search
MAAQEAAAATANASGPRFAPDDPTLPAPWKGLIDGATLYYWNPETNVTQYEKPAAAAAVP
PLPAGPPPATPAQVPEPAPGAFSQPGLQFGQVGQATHQERPGQAVYPQAGQLGWQQQNQQ
PTQQQPFQHVPQHQASFQQVPFQQQLLHMPNQPPQYPNPQQQQPHMPSQPPQYPNPHPQH
MSYQQGPYMQPQQQQQGPPYPYQTDQQPLPQAAYNQGQGQQPPVPQAAYNQGQGQQPPMP
QPSYNQSQQPVIPQSGYNQAQQPQMPHGAYNQSQQPQGMRIPQNQVQHPQQSPSFHPAQT
PQLPQVSQSQGLQMPSQQGQLQHGLQFSQHGKQPQSHGQQSPLLKDDDAGHEGKRTGFSL
PLSQQCGQTPLSNQQLISSHQYPGAVNQPNIPGVSGPLYPAKHLHGGSSPAETNNMGSMN
SPAQMHQGAVPNHIGPSPVRPPMGFEMGNRDGHFERDDPHSYGRFDGANTLQQQPKLAAV
PPSQNPLGMRNGPPYPRADNFGGYNMAPPHSVPNPHNHGPLPMGASVRPPSRMFGPPDFP
GISSADAYRQHHEVTAMGENVPAPFMTFEAAGFPPEILREIHAAGFSNPTPIQAQTWPVA
LQNRDIVAIAKTGSGKTLGYLIPAFMHLRRCHNNPMLGPTVLVLAPTRELASQIQDEVVK
FGRSSGVSCTCLYGGASKGPQLRELERGADIVVATPGRLNDILEMKKISLHQVSLLVLDE
ADRMLDMGFEPQIRKIVDEIPRTRQTLMYTATWPKEVTKIAGDLLRDPVQVNIGSIDELV
ANKSITQYVEVVPPMDKQRRLEQILRDQERGSKVIIFCSTKKMCDQLARGIGRSFNAVSI
HGDKSQVERDNVLNQFRTGRAPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGR
TGRAGATGVSYTFFSEQDWKYAGDLVKLLEGANQHVPPQLLDMAARGATGGLRNQAAGMS
RWDGPGGGRFDPGIGGPVGYGGVREGPGGFGGHEGPGGFGSREGPGGFGVHEGPGGFGGR
DGPDGFGGGREGPGGFGGGREGPGGFGGRKGPGGFSGRDGPGSGGFGGRGGRGSGGFGGR
GGASPGGFGGRGGRGDSPGFGGRGRGDSPGFGGRGRGDFGRGRGDSPSFGGRGRGDFSGG
RGGRGRGFGGRGRSDRGPHDRYISDGRGRYDNRRGFGDKGRDRSYSRSPGRGRSRGYDRR
SDSRSRSRSRSRSRSWSRSRSRSRSWSRSRSRSISRSRSRSRSRDHGAAPERRPRSRSGF
DVLPPAAGAAGPVLTGPVPVPVSGPAVSPVPSLAHAQSLTDTSAMSPMSPGGLVQPAAAS
LNSMNDGNFSGPQAGQPFHGTDAAIPSFPAAETFPPSAIQQGTPDV
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcaggaggcggccgcagccactgcaaatgcgtccggccctcggtttgcccct
gatgacccgacgctccccgcaccctggaaagggctgattgatggcgcgacactgtactac
tggaacccggagacaaatgtgacccagtacgagaagccggctgctgctgctgcggtaccc
cctttacctgcgggtcctccaccagcgacccctgcacaggttccagaaccggcaccaggg
gctttttcacagcctggcttgcagtttggccaagttgggcaggcgacacaccaggagcga
cctggccaggcagtttatcctcaggctggccagcttgggtggcagcagcagaatcaacag
ccgacccagcagcagccgtttcagcatgttcctcaacatcaagcttcgtttcagcaagtg
ccgtttcagcaacagctgctgcacatgccaaatcagccacctcaatacccgaatccgcag
caacagcagccacacatgccaagtcagccacctcaatacccgaatccgcatcctcaacat
atgtcgtaccagcagggtccttacatgcaaccccagcagcaacagcaaggcccaccatat
ccatatcagacagaccaacagccactgcctcaagctgcttacaatcaaggtcaaggtcag
cagccaccggtacctcaagctgcctacaatcaagggcaaggtcagcagccaccaatgcca
caaccttcctacaatcaaagtcagcagcccgtgataccacaatctggctacaatcaagct
caacagccacaaatgccacacggtgcttataatcaaagtcagcagccgcaaggaatgagg
attcctcagaatcaagtgcaacaccctcaacaatctccgagctttcaccctgcccagact
ccacagttgccgcaagtttctcagtctcaaggacttcaaatgccctctcaacaaggccaa
ctgcagcatggattgcagttctctcagcatggaaaacagccacagtcacatgggcaacaa
agtccattgttgaaggatgatgatgcaggtcatgaaggcaagaggactggcttttcatta
ccacttagtcagcagtgtggccaaactccgctttcaaaccagcagttaatttctagccat
caatatcctggagctgttaatcagccaaatatacctggagtcagtgggccattatatccc
gcaaagcatcttcatggtggatcatctcctgctgagactaataacatgggttcaatgaac
tcacctgctcaaatgcatcaaggtgcagttccaaatcatattggtccatcaccagttcgt
cctccaatgggtttcgagatgggtaatagggatggtcactttgaaagagatgaccctcac
tcttatggaagattcgatggggcaaatactctccagcagcagccaaagcttgctgctgtc
ccaccttcacaaaaccccctgggcatgcgaaatggcccaccttatcctcgggcagataat
tttggtggttataacatggcacctccacattcagtgccaaatccacataatcatggtcca
ttgcctatgggagcttctgtgaggccgccatctagaatgtttggtcccccagatttcccg
ggcatatcttcagccgatgcataccgccaacaccatgaagtcactgccatgggtgagaat
gttcctgctccatttatgacatttgaggctgctggattcccaccagagatcctgagagag
atccacgcagctggcttttcaaatcccactccaattcaagctcaaacatggcctgttgca
ctgcaaaaccgggacatagtagctattgccaagacagggtctggaaagacactgggatac
ctaattccagcttttatgcatttgaggaggtgccacaacaatccgatgttgggtcctaca
gtgttggttttggcccctacacgtgagcttgcttcacaaatacaagacgaagtagtcaag
tttggtcgatcatctggagtctcctgcacatgcctatatggtggagcttcaaagggtcct
cagctaagggaacttgagcgtggagcagatattgtggtagcaacaccaggacgtcttaat
gatatcctggagatgaagaagattagcctccatcaggtttcattacttgtgcttgatgag
gctgaccgtatgcttgacatgggttttgagccacagatacgaaagatcgtagatgagatt
cctcgtactagacagactctgatgtacactgccacttggcccaaggaggttacaaaaata
gctggggatttactaagagatcctgtacaggtcaacattggcagcatcgatgaacttgtt
gctaacaaatccatcactcagtatgtagaggtggttccacctatggacaagcagcgacgc
ctagagcagatccttagagatcaagagaggggttcaaaagtcatcatattctgctcaact
aagaaaatgtgtgatcagcttgctcgtggcattggtcgcagttttaatgctgtgagcatt
catggtgataagtcgcaggttgaaagagacaatgttctcaatcagtttcgaactggcagg
gctccaatattagtagccacagatgttgctgctcgtggactcgatatcaaagatatcaga
gtggttataaattatgacttcccaactgggatagaggactatgtacatcgcattgggcgt
acaggaagagctggggcaactggagtctcatacacgttcttctctgaacaggattggaaa
tatgcaggtgatttggtgaaactcttggaaggtgctaaccagcatgttcctccacagctg
ctggatatggctgcacgaggtgctactggaggtctaagaaatcaggctgctggaatgagc
cgctgggatgggcctggtggtggtcgttttgatccaggtattggtggtcctgttggttat
ggtggagttagggagggccctggaggctttggcggtcacgagggccctggaggatttggc
agtcgtgagggcccaggcggatttggtgttcatgagggcccaggcggttttggtggccgg
gatggccctgatggttttggtggtggccgggagggtcctggtggttttggtggtggccgg
gagggtcctggtggctttggtgggagaaagggcccaggtggcttcagtggacgggatggc
cctgggtccggtggttttggaggtagaggggggcgtggatctggtggttttggtggtaga
ggtggagcaagccctggtggctttggtggtcgtggtggcaggggtgattctcctggtttt
ggtgggcgtggcaggggcgattctcctggttttggtgggcgtggcaggggtgactttggg
cgtggtaggggtgattctcccagttttggtggacgaggtaggggagatttctctggcgga
cgtggtggaaggggtcgtggatttggcgggagaggacgttctgatcgaggtccacatgac
cggtacatctcagatggacggggaagatatgataaccgtcgaggatttggtgacaagggt
agggaccggagctacagccgcagcccgggtagaggccgatcacgaggctatgacagaaga
agtgatagcaggagccgtagtaggagcagaagccgcagcaggagctggtcacgtagcagg
agccgcagcaggagctggagccgtagtcggagccgcagcatcagtcggagtcgcagcagg
agcaggagccgtgaccatggtgcagcaccggaacgcaggccccgatcaagatccggattc
gatgtgctgccaccagcagctggagcagctggacctgttttaaccggacctgtacctgtc
cctgtatcaggaccagcagtatctcctgttccttcactcgcacatgcacagtcactcact
gatacatctgcaatgtcgccaatgtcacccggtggactggtccagccggctgctgcatca
ttaaacagcatgaatgatggtaactttagtggtccacaagctggccaacctttccatggg
actgacgctgcaatacccagttttcctgctgccgaaacatttcctccctctgcaattcag
cagggaacacctgatgtgtaa
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integrated database retrieval system
