Panicum virgatum (switchgrass): 120694682
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Entry
120694682 CDS
T07260
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120694682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120694682
03041 Spliceosome [BR:
pvir03041
]
120694682
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120694682
Spliceosome [BR:
pvir03041
]
Complex B
Other components
Prp19-related factors
120694682
Complex C
120694682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_2
PPR
TPR_12
ARM_TT21
TPR_15
UTP6_C
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
120694682
NCBI-ProteinID:
XP_039833810
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All DBs
Position
2K:complement(65799215..65804236)
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AA seq
928 aa
AA seq
DB search
MPSAAGPVAVVSAGSAAKAAPSPAVGISPELYPSEDDLPYEEEILREPFKLKGWWRYLVA
RAAAPFAKRAVIYERALKALPGSYKLWHAYLRERLDHARPHPIDHPAYSSLNNTFERALA
TMHKMPRIWVLYLTSLLDQRLLTRSRRAFDRALRALPVTQHDRIWPLYLRLASLPACPVE
TSLRVFRRYLQFDPSHAEDFINFLISANRWQEAADRLASVLNDDGFRSVKGKTRHQLWLE
LCEILTKHADEVAGLKVDAILRGGIRKFTDEVGKLWTSLADYYVRRGLFEKARDVFEEGV
SSVVTVKEFSVVFEAYTQFEQSMLAAKLEAAEEEGAEDEDEGGGRKNGMDRLSKKFLEDF
WLNDEDDTELRMARFEWLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFEKDPARQVATYV
EAVKTVDPMKAVGKPHTLWVSFAKMYEKHNRLDSAEDIFKRATQVNYKAVDHLASIWCEW
AEMELRHNNFDKAIELMRQATAEPSVEVKRQAAAEGNEPVQMKVHKSLKLWSFYVDLEES
LGTLDSTRAVYERILDLRIATPQIILNYAYLLEEHKYFEDAFKVYERGVKIFKYPHVKAI
WVTYLTKFVQRYKRSKLERARELFHEAVQQAPPDEKKPLYLQWAKLEEDYGLAKRAMNVY
DEAVRAVPNSEKMDMYEIYIARAAELFGVPRTRQIYEQAIESGLPDRDVLTMCMKFAELE
RSLGEIDRSRAIYVHASNYADPNNSDFWKKWNDFEIQHGNEDTFREMLRIKRTVAASRSQ
THFILPEYLMQRDQRLNLDEAVDTLKRAGVPEDEMAALERQLASGPSTAPPAAQNTAPAS
TNRMMNFVSAGVEAQAESSRQQAGNNEDIELPDESDDEEPDVQIAEKSVPAAVFGELGKR
AAESQEGSSGAQENEQLGALERIKRRRQ
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcggcggcgggtccggtggctgtggtgtcggcggggtcggcggcgaaggccgcg
ccctccccagccgtcggaatctcgccggagctgtacccgtccgaggatgacctgccctac
gaggaggagatcctgcgggagcccttcaagctcaaggggtggtggcgctacctcgtcgca
cgcgccgccgcgccgttcgccaagcgtgccgtcatctacgagcgcgcgctcaaggcgctc
ccggggagctacaagctctggcacgcctacctccgcgagcgcctcgaccacgcgcgcccc
caccccatcgaccacccggcctactcgtcgctcaacaacacctttgagcgggcgctggcg
acgatgcacaagatgccgcgcatctgggtcctctacctcacgtcgctcctcgaccagcgc
ctgctcacgcgttcgcgccgcgccttcgaccgagccctgcgtgcgctgccggtcacgcag
cacgaccgcatctggccgctgtacctgcgcctcgcgtcgctcccggcctgccctgtcgag
acgtcgctccgggtgttccgccgctacctccagttcgacccctcccatgcagaggatttc
atcaatttccttatatccgccaaccgctggcaagaggccgctgaccgactggcttccgtg
ctcaatgatgatggtttccgctctgtcaaggggaagaccaggcaccagctatggctcgag
ctctgcgagatcctcaccaagcatgctgatgaggttgctggcctcaaagtggatgccatc
ctgcgcggtgggattcggaagttcaccgacgaggttggcaagctgtggacctcgctggct
gattactatgtcaggagaggccttttcgaaaaagctagagatgtatttgaggagggcgtt
tcttcagtggttaccgtgaaggagttcagcgtggtgtttgaggcatatacacagtttgag
cagagtatgcttgcagcaaagctggaggctgccgaggaagagggagctgaggacgaggat
gagggagggggcaggaagaatgggatggacagattatcaaagaaattccttgaggatttc
tggttgaacgatgaggatgatactgaattgaggatggcaaggtttgagtggctgttggat
cgtagaccagagcttcttagcagcgtgctgttgcgacagaatccacacaatgtggaggag
tggcacaggagggtgaagctttttgagaaggatcctgcaaggcaagtagcgacatatgtt
gaggccgtgaaaactgtggacccaatgaaagccgttgggaaaccccatactctatgggtg
tcatttgcaaagatgtatgagaaacacaatcgtctagatagcgctgaagatatattcaaa
cgggctactcaagtgaattataaggcagttgaccacttagccagtatctggtgtgaatgg
gcagagatggagctgcgacacaacaattttgacaaggctattgagctgatgaggcaagca
acagcagagccctctgttgaggttaagaggcaagctgctgctgaggggaacgaacctgtc
caaatgaaagtacacaaatctttgaaactgtggagcttttacgttgatctggaagagagc
cttggaactttggactctacccgtgctgtttatgagagaatattggatttacgaattgct
actccacagataatactcaattatgcatatcttcttgaggagcacaagtattttgaagat
gcatttaaagtgtatgaaaggggcgtgaaaatattcaagtatccccacgttaaggccatt
tgggtgacctacctcacaaagtttgtacagagatacaagagaagcaagttagaacgagca
agggagcttttccatgaagctgtccaacaggctcctccagatgaaaagaagcccctatat
ttacaatgggctaaactggaggaagactatggtcttgcaaaacgtgctatgaatgtttat
gatgaagctgttagggctgttcctaacagtgaaaaaatggacatgtatgaaatctatata
gcacgtgctgctgaactgtttggcgttccaaggacaagacaaatatacgagcaagcaatt
gaatctggcctcccagacagagacgtgctgacaatgtgcatgaaatttgctgagctagaa
agaagcctcggagaaattgaccgttcgcgtgctatctatgtgcacgcatccaactatgct
gatccaaacaattctgacttttggaagaagtggaatgactttgaaatccagcatggtaac
gaagacacgttcagggagatgcttcgtattaaacgtacagtggctgctagccgcagtcag
acgcatttcatactaccagagtacttgatgcagagggatcagaggctaaatctggacgag
gcagttgatactctgaagcgtgctggcgttcctgaggatgagatggcagccttggaaagg
caactagcttctggaccatccactgcgccaccagcagcacaaaatactgccccagcctcc
actaacaggatgatgaactttgtcagtgctggagtagaggcgcaggctgagagtagcagg
caacaggctggtaacaatgaggacattgagctgcctgatgagagcgatgatgaggaaccg
gatgtccaaattgcagagaagagtgttccagctgctgtgtttggcgagctcggcaagaga
gctgctgagagccaggagggaagctccggtgcccaagagaatgagcagctgggcgccctt
gagaggataaagagacggcgtcaatag
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