Panicum virgatum (switchgrass): 120694748
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Entry
120694748 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase DIS1-like
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120694748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120694748
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120694748
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
120694748
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
FAIM1
zf-Di19
Motif
Other DBs
NCBI-GeneID:
120694748
NCBI-ProteinID:
XP_039833933
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All DBs
Position
2K:66582519..66587343
Genome browser
AA seq
302 aa
AA seq
DB search
MASVTYIDDSHAEVIDPPKNEEMLDVTELVGEHIQHSPKPNVTSYGNVRELLECPVCLSA
MYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQNFGCL
GIYPYYCKLKHESQCQYRPYTCPYAGSECTVADDIPYLVNHLKDDHKVDMHNGSTFNHRY
VKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDAEAKNYSYSL
EVGGSGRKMTWQGVPRSIRDSHRKVRDSYDGLIIQRSMALFFSGGDRKELKLRVTGRIWK
EQ
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagttacttatattgatgatagccatgctgaggttattgatcctccaaagaat
gaggagatgttggatgtcactgagcttgttggtgaacatatccagcattcaccgaaacca
aatgtgacaagttatggtaatgtgcgtgagctactggaatgccctgtgtgtttgagtgcc
atgtatcctccaattcatcagtgctccaacggacatactctgtgttctggatgcaagcca
agggttcataatcgctgcccaacatgcaggcatgaactgggtaacataagatgtcttgct
ctggagaaggtggctgcatcgctagaacttccatgcaagtaccagaattttggttgcctg
ggcatatacccttattattgcaagctgaaacatgaatcacaatgccaatacagaccctat
acttgtccgtatgctggatctgaatgcacagttgctgatgacattccatatctagtaaat
cacttgaaagatgaccataaggttgacatgcacaatggaagcacttttaatcatcgttat
gtcaaatcaaatcctcatgaagttgagaatgccacctggatgctcacggttttcagctgc
ttcggccagtatttctgtctgcatttcgaggcattccagctgggcatggcacctgtctac
attgccttcctccgcttcatgggcgacgacgctgaagctaagaattacagctacagcctg
gaggttggaggcagtggtcgtaagatgacatggcaaggcgtccctcgaagcatcagagac
agccacaggaaggtccgggacagctatgacgggctcatcattcagcggagcatggccttg
ttcttctctggtggcgacaggaaggagctgaagctgcgggtcactgggaggatctggaag
gagcaatga
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