Panicum virgatum (switchgrass): 120694857
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Entry
120694857 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH-like isoform X1
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120694857
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120694857
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120694857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Helicase_C
PHD
PHD_5
RING_XB3-XBAT31
zf-RING_UBOX
zf-RING_2
RNPP_C
TPR_12
PLA2_B
Motif
Other DBs
NCBI-GeneID:
120694857
NCBI-ProteinID:
XP_039834093
LinkDB
All DBs
Position
2K:complement(67657586..67676472)
Genome browser
AA seq
1676 aa
AA seq
DB search
MGRKKSRPVRAAGAASAAAQADPDAPGPSGGTKRAAKAEARRDVRVEVDRSTWGLADADH
RDVAEVVLRDVSVSADGEEALGEAFGASRFSLRILVRDAPEEGFRMGQWPVVPSDCVLLE
YVVHGDGEEKHQLMVSGCFDGPDEGVSGLAHLVSLRFVTLRIQSLRAFRDVGEAQVESFR
VRVEVMEGAFGACQSLLEVARHPWRKSLMNMMAWLRPEVTTSAAIYGVDGLGVLMDDGAN
ADFTPKSDSQFDLAAFYEAVKPSINAEQLEVGLPDLVPQLRPYQLRAAHWMVQREKGNIL
HHEYFNSAPYCVPIDFIHKNSRMFYNPFNGNISLRPEPSPPYVSGGILADEMGLGKTVEL
LACIFAHSRPSSIGLSISQNKTEMAQIKRQKVERVECVCGAASESSAYKGLWVQCDICDA
WQHADCVGYTPKEDIHFDNTAEDVASKNEKSDKKPGIRRKKKSRCSIVDTEDKYVCALCL
ELTEAAQTNIFSHATLIVCPAPILAQWYSEITRHTRPGSLKVCIYEGARNLDLATIQKID
MTDISTADVVLTTYDVLKEDLSHDFDRHDGDRRFLRFQKRYPVVPTVLTRIHWWRLCLDE
AQMVESSKTSVTEMAMRLHAQHRWCVTGTPIQRRLDDLFGLLRFLRTSPFDTYRWWVDII
RDPYEKGDRIAMNYAHNFFREIMWRSSKVHVSGELQLPPQEECFSWLIFSSIEEYFYKKQ
HATCMDHAHQIIRSLRNDVNRKESTSASNALLNVYLSNDDIAKLLVPLLKLRQACCHPQV
GSSGLCSLQHNPLSMDEILQVLIGKAKIEGEEELRKIVVALNGLAGLAAIEQKNQEAISF
YKEALALADENVDDFRVDPLLNLHINYNLAELLRTSSEYLQECPFKNPTSEVDISRKRKE
ISTVETDLRSIKRNKICENGVSSLTANGLEICEEDENVIGQACTNGEMDTENVAGGHSSS
KCFADECLRKTCNAITEKYLSVFTSRLIVAQKDFNASFTEVLNITRELQSEHMDWWLHAL
DCIGQSNVSAGELLKKIDNSSTKSTTGLGSRGISSRVKSIAGLKYTIQADIDSLQTSRQQ
LMDRLLEVDNTMDNPKDEDIEGQRYCPKCYDGSGSLCIQCELDELFQRYEARLFLVKKSN
NDSVIDSVEEAQDLQRRKYELNHFFRNKKSNEGSEPGYDNNNPRSARENIQVYRHPSRTE
TTLRVIRNHSKTVLGRQYSAIAKKHLLLFEAMRKEFSQARFLSIAQNQLLRAHDEIKMSI
SRLQLKEKDDEPSAVNIVTREELIPYNVQFTSEKFMSLTSLARVRGQLRYLKGLALCNKK
TLNKHGESLPKAGDAVDTATSCSVTGQTISDISSEQCPICQEKVFDQKMVFQCGHFVCCK
CCLYMTEQAATQFGKRKKWIMCPTCRQRTDLENVAFVVEKQSDKAEKSAEDLTESTISVQ
GSYGTKIEAVTRRILRITSTDGTAKILVFSSWNDVLDVLEHSLAANNISYVRMKGGRKSQ
SALSQFKGQLSNINVDKMKKTDSKMQPVQVLLMLIQHGANGLNLLEAQHVILVEPLLNPA
AEAQAISRIHRVGQDKSTFVHRFIVKKTIEESIYKLNRSRAVCSTINRKSKNFKDEPVLT
LKDVESLFPMTAPDEPPELADEDHDDSLRSLPPSVAAGLAAERRRLIEQQDKPTIR
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atggggaggaagaaatcgcggccggttcgagcggcgggcgccgcctctgcggcggcccag
gccgaccctgacgcgccgggccctagcgggggtacgaagcgcgcggccaaggccgaggcg
aggagggacgtgcgcgtggaggtggataggagcacgtgggggctcgccgacgccgaccac
cgcgacgtcgccgaggtggtgctccgagacgtgagtgtctccgccgacggggaggaggcg
ctgggggaggcattcggggcatcaaggttctccttgcgtattctcgtgcgtgacgcgccg
gaggaggggttcaggatgggccagtggcccgttgtgccgtcggattgcgtgctcctggag
tatgttgtccatggggatggcgaagagaaacaccaactcatggtgtcagggtgttttgat
ggtcctgatgaaggtgtatccggcctcgcccacttggtgagtttgagattcgtcaccctg
cgcattcaatcgcttagggcgtttcgggatgtgggcgaagcgcaggttgaatcattcagg
gttagagtggaggtgatggagggggctttcggcgcctgtcaatcgctactggaggtggct
aggcatccatggaggaagagcttgatgaatatgatggcttggctgcgtcctgaggtcaca
acatcggctgcaatttatggggtggatggccttggtgtgctgatggatgatggtgctaat
gctgatttcacaccgaaaagtgattcgcagtttgatcttgctgctttttatgaggcagtt
aagccttcgattaacgcggaacagctggaagttggtcttcctgatttagttcctcagctc
aggccatatcaactccgtgcagcacattggatggttcaacgcgaaaagggaaatattctc
catcatgaatattttaattctgcaccatattgtgttcctattgattttattcacaagaac
tccagaatgttctacaatcctttcaatggaaatatttcattgcgaccggagccttctcca
ccttatgtttctggggggattttggctgatgaaatgggcttggggaaaactgtcgagctt
ttagcttgcatttttgcccatagtaggccatcttcaattggcctttctatctcccagaac
aaaacagaaatggctcaaataaagaggcagaaagtagaaagggttgagtgcgtttgtggg
gctgcgagtgaaagttctgcatacaagggtctgtgggtccaatgcgacatttgtgatgcc
tggcaacatgctgattgcgttggttacacacccaaagaagatatacattttgataacact
gctgaagatgtagcatcaaaaaatgaaaaaagtgacaagaagcctgggattagaaggaaa
aagaaatccaggtgctctattgttgatacagaagataaatatgtttgtgcactgtgcttg
gagcttactgaagcagctcaaactaatatattcagccatgctacattgatagtatgtcct
gcaccaatattggcacagtggtattctgaaattacccggcacacaaggccaggatctctg
aaagtttgcatttatgaaggtgcaaggaacttagatctggctaccatccaaaaaattgat
atgactgatataagtaccgctgatgttgtcctgacaacctatgatgtcttgaaagaagat
ctatcacatgattttgatcggcatgatggtgatcgtcgtttcttaagatttcagaagaga
tatcccgtcgttccaactgtcttgacaaggatccactggtggcggctttgtttggatgaa
gctcagatggtagagtcaagcaagacttctgtgactgagatggcgatgaggctacatgct
caacaccgttggtgtgtcacaggaaccccgatacagcgcaggcttgatgatctctttggg
cttctacgttttcttaggacaagcccatttgacacatatagatggtgggtggacattatt
agagacccatatgagaagggggaccgaatagctatgaattatgcacacaatttctttagg
gaaatcatgtggcgctcttccaaagtccatgtctcaggtgaactacagcttcctcctcaa
gaagagtgtttttcatggctcatcttttcttccattgaagaatatttctataagaagcag
catgctacctgcatggaccatgcacatcagattattagaagtttgagaaatgatgtcaac
agaaaggaatcaacttcagcttcaaatgctttactaaatgtttacctctccaatgatgac
attgccaagctcctagtcccactgctgaaacttaggcaggcatgctgccacccgcaagtg
gggagttctggtctctgctccctgcagcataacccgttgtcaatggatgagattttacag
gtccttattggtaaagcaaaaattgaaggagaggaagagcttaggaaaattgtagttgcc
ctgaatggtcttgcagggctagctgctattgaacaaaagaaccaagaagccatttcattt
tacaaagaagcactagctttggctgatgaaaatgttgatgatttccgtgttgaccctcta
ttgaatcttcatatcaactacaatcttgcggaactgcttagaactagttctgaatattta
caggagtgcccattcaaaaatccgacttctgaagttgacatcagccggaaaagaaaggag
attagcactgttgaaacagatctacgtagcataaagcgaaataaaatatgtgagaacggt
gtttcgagtttgacagctaatggtttagaaatatgtgaggaagatgaaaatgttattgga
caagcatgcacaaatggagaaatggacacagagaatgttgctggaggccactcatcatca
aagtgttttgctgatgagtgcttgaggaagacttgcaatgcaatcacagaaaagtacttg
tcagtttttacttcaaggctgatagtagcacagaaggattttaatgcatcattcacagag
gtcttgaatatcactagggagctacagagtgagcatatggattggtggctacatgctttg
gactgcattggccagagcaatgtttctgctggcgaactccttaagaagattgataattct
tctactaagagcaccactggtttgggttcaaggggaatatcttccagggttaaaagtatt
gctggcttaaaatatacaattcaagctgatattgattctctacaaacttcaaggcaacaa
ctgatggatagacttttggaagttgacaacacaatggataacccaaaggatgaggacatt
gagggtcagcgatattgtccaaagtgttatgatggttctggttctttatgtatccaatgt
gagctagatgaactctttcagaggtatgaagcacggctgtttcttgttaagaaatcgaac
aatgattctgtcattgattcagtagaagaagcacaggatctacagaggcgaaaatatgag
ctcaatcacttcttccgtaataaaaaatctaatgagggatctgaacctggttatgacaat
aataatcctaggtcggctcgagaaaacatacaggtctacaggcatccttctcgaactgag
accacattgagggttatccgaaatcactcaaagacagtattgggaaggcaatattctgca
attgctaaaaagcatttacttctttttgaggctatgcgcaaggagttttctcaagcacgg
tttttgtcaattgctcaaaatcaattattgcgtgctcatgacgagatcaagatgtccatc
tcaagactgcagctcaaagagaaagatgatgaacctagtgctgtcaatattgtaactaga
gaggaactcataccatataatgtccagtttacaagtgaaaaattcatgtctctcacatct
ttagcccgtgtaaggggtcaactccggtatttaaagggattggcgctatgtaacaagaaa
acacttaacaagcatggcgaatcattgcctaaagcaggcgatgctgttgatacagctact
tcatgttctgttacaggacaaaccatttctgatattagtagtgaacaatgcccaatttgc
caggagaaggtttttgaccaaaaaatggttttccagtgtggtcatttcgtatgctgcaag
tgctgtctttacatgacagaacaagctgcgacacaatttgggaagcgtaaaaaatggatc
atgtgccctacatgccgtcaacgtacagatcttgagaatgtcgcttttgtagttgagaaa
caaagtgacaaagctgaaaagagcgcagaagatttgactgaaagcactatttctgtccaa
ggttcatatggaacaaagattgaagccgtcacaagaagaatattgagaatcacttcaact
gatggaacagctaaaattcttgttttctcaagttggaatgatgtacttgatgtattagag
cactctcttgcagctaacaacatttcatatgttcggatgaaaggaggaagaaaatcacag
tcagcactctcccaattcaaaggtcagttgagcaatataaatgttgataaaatgaaaaag
acagactccaaaatgcagcctgttcaagtactactgatgcttatacagcatggagcaaat
ggtcttaatctactggaagcacagcatgttattctagtggagccattactaaaccctgcg
gctgaggcacaggctatcagcaggatccatagagttgggcaagacaagagcacatttgtt
caccgttttatagtgaagaaaacaatagaagagagcatctacaaattaaacagaagcaga
gctgtctgctctactataaaccgaaaatccaaaaatttcaaagacgaacctgttttgacc
ctgaaggatgtcgagtcactattcccaatgacagcacctgatgaacccccagaactggca
gatgaagatcatgatgatagcttgaggagtttacctccatctgttgcagctgggttagct
gctgaaagaaggcgactgatagagcaacaggacaaaccaacaataaggtaa
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