Panicum virgatum (switchgrass): 120694903
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Entry
120694903 CDS
T07260
Name
(RefSeq) alpha-L-arabinofuranosidase 1-like isoform X1
KO
K01209
alpha-L-arabinofuranosidase [EC:
3.2.1.55
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00520
Amino sugar and nucleotide sugar metabolism
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00520 Amino sugar and nucleotide sugar metabolism
120694903
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.55 non-reducing end alpha-L-arabinofuranosidase
120694903
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Gene cluster
GFIT
Motif
Pfam:
ASD1_dom
Alpha-L-AF_C
CBM_4_9
CBM_6
Motif
Other DBs
NCBI-GeneID:
120694903
NCBI-ProteinID:
XP_039834156
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Position
2K:complement(68073297..68078863)
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AA seq
705 aa
AA seq
DB search
MGVQRQIARAASLLHALAVVCALCWALSARFVQGQSQTGQLTVDASLQNARKIPDKMFGI
FFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLIIGDESSIIVGTDRTSCFAHNP
IALRMEVLCDSKRTNACPSGGVGVYNPGYWGMNIEKGKVYKVSMHIRSSDAVSLTVSLTS
SDGRQKLAAHTITGSKKSFAKWTKIEFSLKSRQNNTNSRLQFTTSKSGVIWLDQVSVMPL
DTYMGHGFRKDLSLMLANLKPQFLKFPGGNYAMGNHLRNAFRWSETVGPWEERPGHFNDA
WGYWTDDGLGFFEFLQLAEDLGASPVWVVNDGASLNEEVSTATIASLVKDVVDGIEFARG
GPKTPWGSVRAAMGHPEPFKLDYVSIGNQECWMLYYRGNYQKFYSAIKAAYPEVNIISSC
DRSTISPSNPADLYDVRVYTSSSNMFSRTSMFDNTPRSAPKAIVSEYAVTGNDAGKGTLV
AALAEAAFLIGLERNSDVVEMASCAPLFVNDNDRRWSPDAIVFNSWQHYGCPNYWMLHFF
KDSSGAALHPTTIQISDYDQLVASAITLQNATDRSPYLRIKVIAIVQFPCFNNQKSSKYE
IKEKQEWARTLAIEILLQVVNFGNRAVDLNISVVGLANGIKMSGSKQTVLTSSNPLDENS
FEQPEKVAPVSSPLANAKPQMGLSLRPYSLTSFDLLLEASKHASI
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgcagagacagatagcccgtgctgcttctttgcttcatgcactggctgtagtg
tgtgccctgtgctgggcattgtctgctcggtttgtgcagggccagagccaaactgggcag
ctgacagtggatgcctcgctgcagaatgctaggaagatccctgataagatgttcggtatc
ttttttgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaac
agaggattcgaggctggtggccctaatacaccttccaatatcgatccatggttgatcatt
ggggatgaatcaagtatcattgttggaactgatcgaacttcatgttttgcgcataatcca
attgcacttcggatggaggttctttgtgattctaaaagaaccaatgcctgcccatccgga
ggtgttggggtctacaatcctggttactggggaatgaacattgaaaaagggaaggtttat
aaggtgagcatgcatattaggtcatcagatgcggtgtccttgaccgtctcattgacaagt
tctgatggtcgacaaaaactcgctgctcataccatcacaggtagcaagaaatcctttgca
aaatggacaaagatagaattcagtttgaagtccaggcaaaataataccaactccaggctt
caatttacaaccagcaagagcggggtgatttggcttgatcaagtgtcagtcatgccattg
gacacttacatggggcatggttttcggaaagatctttctttgatgttggccaatctcaag
cctcagtttctcaaatttccaggtggtaactatgccatgggaaatcacctacggaatgca
tttcggtggagcgaaactgtgggaccatgggaggaaagacctggtcacttcaatgatgcc
tggggatactggactgatgatggacttggattttttgaattccttcagttggctgaagac
ctcggtgcttcaccagtttgggtggtaaatgatggagcaagccttaatgaagaagtttct
actgcaacaatagcatcattggttaaggatgttgttgatggcatcgagtttgccagggga
ggacccaaaacaccttggggttcagttcgtgcagcaatgggacatccagaaccttttaag
cttgattatgtttcaataggaaatcaagaatgctggatgctctactacagaggaaattac
caaaagttttattctgcaattaaagctgcataccctgaggtcaacattatatcaagttgt
gatagatcgactatttctccatccaaccctgctgatctgtatgatgttcgtgtctacacc
tcttcgagtaatatgttttccagaactagtatgtttgacaacacaccacgtagtgcgccc
aaggcaattgttagtgagtatgctgtgactgggaatgatgctggcaaaggaacactggta
gcagcactagcagaggctgcatttctcattggattggaaaggaacagtgatgtggtcgag
atggcgagctgtgcacccctttttgtaaatgacaatgatcgcaggtggagcccagacgcc
atcgtcttcaactcgtggcagcactatggatgcccaaactattggatgctacacttcttc
aaggattcgagtggcgctgcccttcaccctaccaccattcagatctccgactacgatcaa
ctggttgcgtctgccatcactttgcagaatgctacagacagaagcccttacctaagaata
aaggtaatcgccatcgtccaatttccatgtttcaacaatcagaaaagtagcaaatatgaa
ataaaggaaaaacaagaatgggcaaggacgttggcaatcgaaattttgttgcaggtggta
aatttcgggaacagagctgtggatctcaacatctctgtggtggggctggcaaacggaatc
aagatgtctggatcgaaacagacagttctaacatccagcaatccacttgacgagaactcc
ttcgagcagccagagaaggtggcgccggtgtcgagcccgttggcaaacgcgaagccgcag
atgggcttgtccctgaggccgtactccctcacctcgtttgacctgctgctggaggcgagc
aagcatgccagcatctga
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