Panicum virgatum (switchgrass): 120694936
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Entry
120694936 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120694936
KO
K08518
syntaxin-binding protein 5
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120694936
Membrane trafficking [BR:
pvir04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
120694936
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
120694936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ANAPC4_WD40
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_Prp19
WDR55
Beta-prop_HPS5
Synaptobrevin
Motif
Other DBs
NCBI-GeneID:
120694936
NCBI-ProteinID:
XP_039834203
LinkDB
All DBs
Position
2K:68577080..68586725
Genome browser
AA seq
1115 aa
AA seq
DB search
MFTKRLFHKALHHDHHHHQAGGGAPPAAPGDVPQMDAQIALHYGVPYTASLLAFDPVQRL
LAVGTLDGRIKIFGGDNIEGILISPKSVPYKFLQFIINQGLLVAISNENEIQVWNLEFRQ
LFYSSQWDVNITAFAAIEGSFLMYLGDENGLLSVLKYEVDDGKLQRMPYNVPIQSLAERA
GISLQDPQPIVGILIQPDTFGTRVLIAYEKGLLVLWDVSDNNAVSVRGYGDLHVKGQITG
ARSDADEDQSNDAIDDSEEEREICSLCWASRGGSIVAVGYITGDILLWDMNTGPPRQVKQ
MDVSSNVVKLQLASGSRRLPVIVLHWSAGSSIHCNKGGHLFVYGGDDMGSEEVLTILSLE
STAGLESVRCMSRMDLKLDGSFADMILIPDTGVLDKSRTSALFILTNPGQLNFYADGSLF
SVQNTKEGNALPEARKSPVAIPTIDPNITVTNLCSLTGRELSNISLKKFCARQNAGPFIL
GNMKWPLTGGVPSEMSLNEDHAVERLYIAGYQDGSVRIWDATFPVLMPMFVLDGKVADIN
LNGANASVSSLAFCSLNMTLAVGTTSGLVRIYKLREHTGGSSFHFVSELKQEVHVVRHGK
GFHCYVAFLASNCPVRSLLFTVSGEVLATGYQNGQVAMFDPSQLSILFTVDCASGTNSPV
VCLGIYSVMTSDAKADESEKESPQKARLPRDCLLSLTKDGRVTVLDCTTGVMMNSHILDQ
KQSSAISMYVIDGASDEKQTQLSEDTVGSLGQTGKEGNDVHNKQAPGVGKHLKNASHLSQ
NGGSDSLLICCEDVLLLLSLASLIQGKNKHLHKLKLAKPCCWSAVLKNMDGKIFGLILAY
QTGTIELRSVPDLAIIAESSLMSILRWSYKAGMDKSMSSSNGQITLVSGSEFAIISLMAS
ENDFRIPESLPCLHDKVLAAAAEAAISFSTEQRRKQNPAAGILGGIIKGMKGKAEESAKM
RESFTVQTPGEYLESFFLKDSFVEPPIPNLDDPIEELSIDDIEIDDEVPSPAPASSSTSH
RNNRTTEEEREKLFEGSSHVGEPRMRTPQEILTKYKFGGDAAAAAAHAKDKLMQRQEKLE
RISQQTAELQSGAENFASLAQELAKTMENKKWWKL
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgttcaccaagcgcctcttccacaaggcactacaccacgaccaccaccaccatcaggca
gggggaggagcaccaccagctgcacctggggacgtgccccaaatggacgcgcagatcgcg
cttcactacggggtgccctacacggcctcactactcgccttcgatcccgtccagcgcctc
ctcgccgtgggaacgctggacggtaggataaaaatatttggaggtgataacattgaaggc
attcttatatcaccaaagagtgtgccgtacaaattcttgcagtttataataaaccagggg
cttctggttgcaatttctaatgaaaatgaaatccaggtatggaatcttgagttcaggcaa
ctgttttattcatcccagtgggatgtcaacattactgcttttgcagccatagaggggtcc
tttctgatgtaccttggagatgagaatggtcttctttctgtattgaagtatgaggtagat
gatgggaagcttcaaagaatgccatataatgttcctatccagtccttagccgaaagagct
ggcatttccttacaggatcctcaacctattgttggaatactgatccaacctgacactttt
gggacaagggtgctaattgcgtatgagaaaggattgctggttctttgggatgtatctgat
aacaatgcagtttcagttagaggctatggggatttacacgtgaagggtcaaatcactggt
gcacggagtgatgctgatgaagatcaatcgaacgatgctattgatgacagtgaagaagaa
agagaaatttgctctctttgttgggcatcaagagggggctcaattgttgctgttggctat
ataacaggagacatacttctatgggatatgaatacaggaccccccaggcaagtcaagcaa
atggatgtttcatctaatgttgttaagctgcagctggcttcagggagtcgtaggcttcct
gtcattgtattgcattggtctgctgggtcatcaattcattgtaataaaggagggcatctt
tttgtatatggtggtgatgatatgggatctgaagaagttctcacgattcttagtctggag
tcgactgctggattagaatcagtaagatgcatgtcaaggatggacctcaaacttgacgga
tcctttgctgatatgattcttattcctgatactggggttcttgataaaagcagaacttct
gcacttttcattttgacaaatcctggacaactgaatttttatgctgatgggtctctattt
tctgtgcaaaatacaaaagagggaaatgctctgcctgaagcacgaaaatctccagttgcc
attcctaccattgatcccaacataacagtcacgaatctttgttcactaactggtagagaa
ctttcaaatatttcactgaagaaattttgtgctaggcagaatgctggacctttcatatta
gggaacatgaaatggcctttgactggtggggttccaagtgagatgtcactgaacgaggat
catgctgttgaaagactatacattgcaggctatcaagatggttctgtgagaatttgggat
gcaacgtttcctgttctgatgccaatgtttgtcttggatggaaaggtggctgatattaat
ttgaatggggcaaatgcttctgtatcatctctggccttttgttcattaaacatgactttg
gctgttggaacaacaagtggtctggtacgcatctataaacttcgtgagcacactgggggt
tcaagctttcactttgtgagtgaattgaagcaagaagtccatgttgttcgtcatgggaaa
ggattccattgttatgttgcctttttggcatcaaattgcccagtgcgatctctattattt
acagtttcaggagaagtacttgccacaggctatcagaacggtcaggtcgcaatgtttgat
ccaagtcagctatcaattctattcactgtagattgtgcatcaggaacaaactcccctgtt
gtttgcttgggcatttacagtgttatgacgtctgatgcaaaagcagatgagtcagagaaa
gagagtcctcagaaagcaaggttacccagagattgtcttctttccttgacaaaggatggc
cgtgttactgtacttgactgcacaacgggtgtgatgatgaattcacatatcttagatcag
aagcaatcatctgcaatttctatgtatgtcatagatggagcttcagatgagaagcaaacc
caattatcagaagacacagtcgggagtctaggtcagacaggaaaagaaggcaatgatgtt
cacaataaacaagcaccaggagttggaaagcacctgaaaaatgcttcccacctttcacaa
aatggtggttcagattcacttcttatctgctgtgaggatgttttgcttttgttatccctt
gcatcattgattcagggaaaaaacaagcatctacataagctgaaacttgcaaaaccttgt
tgctggtcagcagttttgaagaatatggatggcaaaatttttgggttgatattggcttat
cagactggcactatagaattgaggtctgtgccagatctggctattattgctgagagctcc
ttgatgtcgatattgagatggagttacaaggcaggcatggataaatccatgagctcctca
aatggacaaattactctggtaagtggatctgaatttgcaatcatctctctcatggcctca
gagaatgacttcaggattccagaatctctgccgtgccttcatgacaaagttcttgcagca
gctgcggaagcagctattagtttctcaactgagcagagaaggaagcagaatccagcagca
gggatccttggtggcatcattaaaggaatgaaaggcaaggctgaagaaagtgcaaaaatg
agagagagcttcactgtgcaaacccccggcgaatatttggagtcatttttcttgaaagat
tcatttgttgaaccaccaataccaaatcttgatgacccgatagaagaactgtcaatcgat
gacatagagattgatgacgaagtaccttccccggcaccagcatcatcctctacatcccac
aggaacaatagaacaacagaggaggagagagagaagctatttgaagggtcaagccatgtt
ggtgaaccaagaatgagaactccacaggaaattctaacgaaatataaatttggcggggac
gcggcagcagcagctgctcatgccaaggataagctgatgcagcggcaggagaaactggag
agaataagccaacaaactgcagagcttcagagtggagctgaaaactttgcttccctggcg
caggagcttgcgaaaaccatggagaacaagaagtggtggaagctataa
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