Panicum virgatum (switchgrass): 120694958
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Entry
120694958 CDS
T07260
Name
(RefSeq) CCR4-NOT transcription complex subunit 9-like
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120694958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120694958
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120694958
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
120694958
NCBI-ProteinID:
XP_039834231
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Position
2K:complement(3951166..3962795)
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AA seq
432 aa
AA seq
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MAALLQEVLLVYPTLSSPTLSANAASRVCNALGLLQTVAAHRLTRTPFLAAQIPLYLYPF
LNTTSKAKASGQEREPEPVSAPPDGSHRYWYPQKQGHRCHHRHHFSLGDDVHAPAPPATR
ARARARNVLGGGCGGLGGACREDLGCGGRGLGLCGGGSPTRGCDGARTRQGGQGGSSRAD
RSGRARAGGCSPARGCACAGRTRAGGCSHRDGGVGRPRASQSTKRGSSRGGKTPTLCLAS
LNVIDALVKVDDTEAVNFLVTSQVIPLCLRIMETDSELPKIVATSIVKKIMLDEFGLQYI
CATADRFFKAATALAAMVNALAEQPSARLLKHVVRCYLRLTDNPRARDALQICLPQALKD
GTFDHCLQDDPATMCCLQQLLDNLGAPGGGGGPAAAGGGARHYPGAGPAAGGSRGGGSST
PAGAGPSRAPWM
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggctgcactactccaggaagttctgttagtctaccctacactttcatccccaacatta
tcagcaaatgcggcgagccgagtctgcaatgcacttggacttcttcagactgttgcagca
caccgtctgaccaggaccccctttttagcagctcaaattcccctgtacttatacccattc
ttgaacactaccagcaaggccaaagcatcggggcaggagcgggagccggagccggtgtcg
gcgccccccgacggctcccaccggtactggtacccccagaagcagggccaccggtgccac
caccgccaccacttctccctcggcgacgacgtccacgcccccgctcctccggccacccgc
gcccgcgcccgcgccaggaacgtcctgggcggcggctgcggtggtctgggcggcgcctgc
agggaggatctgggctgcggcggccgcgggctcggcctgtgcggaggcggcagccccacc
cgcggctgcgacggcgccaggacccgccagggcggccagggtggcagcagcagggcggat
cggagcgggagggcccgtgccggcggctgtagccccgcccgcggctgcgcctgcgccggg
aggacccgcgccggcggctgcagccatcgcgacggcggcgtagggcggccgcgggcctcc
cagagcaccaagcgcggcagcagcaggggaggaaagactccaacactttgcctcgctagc
cttaatgtcatcgacgctcttgttaaggtagatgatacagaagctgtcaatttcctggtg
acaagtcaagtaatccctctgtgcttgagaatcatggagacagatagtgagcttccgaaa
atcgtggccacttccatcgtcaaaaagatcatgctagacgagttcgggttgcagtacatc
tgcgccaccgcggaccgtttcttcaaggcagccacggctttggcggccatggtgaacgcg
ctggccgagcagccctccgccaggctgctgaagcatgtcgtccgctgctacctgaggctg
acggataaccccagggcccgtgacgcgctgcagatttgccttccccaagctctgaaggat
gggacgttcgaccactgccttcaggatgaccctgccacaatgtgctgtctccaacagctg
ctggacaatctgggtgctcctgggggcggcggcggacctgcggcggctggcggtggagca
cgtcattatcctggggcaggccctgcggcgggcggaagccgcggaggaggatcctcgaca
ccggcaggcgcaggcccgagtcgcgcgccgtggatgtaa
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