Panicum virgatum (switchgrass): 120695100
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Entry
120695100 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120695100
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
120695100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120695100
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
120695100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GIY-YIG
Motif
Other DBs
NCBI-GeneID:
120695100
NCBI-ProteinID:
XP_039834348
LinkDB
All DBs
Position
2K:12126733..12138095
Genome browser
AA seq
467 aa
AA seq
DB search
MRTMLFGCFGLGGGEAAEAGSGSKCGAENKNGNFPGLTAFSPLTTCSWVPRVLLLLPAPV
AGRGGGGFFCCYLLRSLCPRSRSRTYIGFTVNPRRRIRQHNGEIASGAWRTRRGRPWEMV
LCIHGFPSNVAALQFEWAWQHPIESLAVRKAAAEFKSLGGIGNKVKLAYTMLNLPSWENL
NLTVNFFSSKNIKFTAGCLSLPTQMKTVVCAMEDLQCSTDGPSSEEDDLSQEPHDRQEEE
DGFSPDPQERQEEDSFSHDPQDQLKLSDWPQDRQELSDSPLQDERSEHYWQRMSTADQDE
HCWQQPFPDPDGHSGHCWQQLLSDQDEHSGHCWQEPSFDLAQPMGAQAGIVEHDAGDSID
EFAPMEWSKIPDTRREFNGLRTSPRCSLSLSGDDCKTAVEDEPGDLSPLFMSNAAGSDDS
DGHIIDGSDVVDLVTPTPVGRLRRRGCVDSICPKIIDLTSSPVVIQL
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaggacgatgttgttcggctgcttcggcctcggcggcggtgaggcagcggaggccggc
agcggcagcaagtgcggcgcggagaacaagaacgggaattttccgggcttgacagcattt
tcgcctctcaccacctgttcctgggtaccaagagttcttctgctgctacctgctccggtc
gcgggccgcggcggcggcgggttcttctgctgctacctgctccggtccctgtgcccgcgc
agcaggagccgcacctacatcgggttcacggtgaacccgcggcggcggatccgccagcac
aacggcgagatcgccagcggcgcgtggcggacccgccgcggccggccctgggagatggtt
ctctgcatccacggcttcccctccaacgtcgccgcgctccagttcgagtgggcgtggcaa
catcccatagaatccctcgccgtgcgcaaggccgccgccgagttcaagtcgctcggcggc
atcggcaacaaggtcaagctcgcctacaccatgctcaacctcccctcatgggagaacttg
aacctgacggtgaatttcttctcctcgaagaacatcaagttcaccgctggctgcctgtcg
ctgccgacccagatgaagacggtcgtctgcgcgatggaggatctgcagtgcagcaccgat
ggtccctcgtctgaggaggacgacttaagccaggagcctcatgaccggcaagaggaggag
gatggcttcagccctgatcctcaggaaaggcaagaggaggacagcttcagccatgaccct
caagaccagctaaaactgtctgattggcctcaagaccggcaagaactgtctgattcgcct
ctccaagacgaacgctctgaacattattggcagcgaatgtccactgctgatcaagatgaa
cactgttggcagcagccattccccgatccagatggacactctggacattgttggcagcaa
ctgctctctgatcaagatgaacactctggacactgttggcaggaaccatcctttgatcta
gcacagccaatgggtgcgcaagccgggattgtagaacatgatgctggggactccattgat
gagtttgctccgatggaatggagcaaaatccctgacacaagaagagaattcaatggacta
agaacatcgcctcgatgttccttgagcctcagcggtgatgattgcaaaacagccgtggaa
gatgagccaggagacttatccccgttgtttatgtccaatgctgctggttcagatgatagt
gatggccatatcatagatggaagtgatgtggtagacctggttaccccaaccccagtaggc
aggctgcggagaagaggttgcgtcgacagcatttgcccaaagatcattgatctgacatca
tcgcctgttgtcattcagttgtag
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