Panicum virgatum (switchgrass): 120695646
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Entry
120695646 CDS
T07260
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120695646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120695646
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120695646
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120695646
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
120695646
NCBI-ProteinID:
XP_039834789
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Position
2K:44845564..44849185
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AA seq
279 aa
AA seq
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MATPAAEKPDDVEIREVWADNLEAEFAVIRDIVDDYPYVAMDTEFPGVVCRPLGTYKSAA
EFNYATLKANVDMLKLIQLGLTFSDEHGGLPALGPGGRPCVWQFNFRGFDPRTDVAAADS
IDLLRRSGIDFARHGADGADARRFAELLMSSGVVMNSDVRWVTFHSGYDFGYLLKLLTGT
NLPDTMSGFFNLIKIYFPVIYDIKHLMRFCNSLHGGLNKLAELLDVARVGICHQAGSDSL
LTALSFKKLKEAYFNGLTEKYAGVLYGLGFEGGETTSAH
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcccgctgcagagaagcccgacgatgtggagatccgcgaggtctgggcggac
aaccttgaggccgagttcgccgtgatccgcgacatcgtcgacgactacccctacgtcgcc
atggacacggagttccccggcgtggtgtgccgcccgctcggcacctacaaatccgccgcc
gagttcaactacgccaccctcaaggccaacgtcgacatgctcaagcttattcagctcggg
ctcaccttctccgacgagcatggagggctgccggcgctcggcccaggcggccgaccctgc
gtctggcagttcaacttccgagggttcgacccccggaccgacgtcgccgccgcggactcc
atcgatctgctccgccgcagtgggatcgacttcgcccgccacggtgcggatggagccgac
gctcgacgcttcgcggagctgcttatgtcctccggcgtcgtgatgaattccgatgtgcgt
tgggtaacctttcacagcggctacgacttcggctacttgctcaagttgctcaccggcaca
aacctgcctgacacgatgtcgggattcttcaatctcatcaagatctacttccctgtgatc
tacgacatcaaacacctcatgagattctgcaatagcctccatggcgggctgaacaagctt
gctgagctgctcgacgtcgcccgggttggaatctgccaccaggcagggtccgactcgctt
ctgactgcactttcctttaagaagctcaaggaggcatactttaacgggttaaccgagaaa
tatgctggtgtgttgtatgggcttggctttgagggtggggagaccacctcagctcactga
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