Panicum virgatum (switchgrass): 120695658
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Entry
120695658 CDS
T07260
Name
(RefSeq) probable E3 ubiquitin-protein ligase RNF144A-B
KO
K11975
E3 ubiquitin-protein ligase RNF144 [EC:
2.3.2.31
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120695658
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
120695658
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
120695658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IBR
zf-RING_UBOX
zf-C3HC4
zf-RING_2
zf-C3HC4_2
RING_XB3-XBAT31
IBR_1
Motif
Other DBs
NCBI-GeneID:
120695658
NCBI-ProteinID:
XP_039834806
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All DBs
Position
2K:45046964..45049487
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AA seq
348 aa
AA seq
DB search
MLDLVAIAADDSALAEDMQVEEVLQFSTQFKSENVCAVCKQVIQSLEASWKPDNCDHVIC
IACFCQYTEATGLPRCVVASCESLCHTEMQHEIRVPHGTLISTEDMDSRKGKNPLNAMPQ
ELGQCSHGADAMISNEFYCSICMETMHIGEFFPIDGCTHTFCISCVRQYIAAKVEENVLS
IGCPDRGCKKGVLHPEACRDVIPLQLFQRWGAALCDSSLGEFKFYCPFKDCSALLVDDPG
PGEAVITNVECPHCCRMFCAQCKVPWHDGVTCTEFQRLGKDERGREDLLLRKVAQERKWQ
RCPKCKMYVERITGCVFIICRCGHCFCYLCASPMSRDSHYCKTCKRTY
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgctagacctggttgctatagcagctgatgattctgcgctggctgaggatatgcaggtt
gaagaggttctccaattctcaactcagttcaagagtgagaatgtctgtgcagtttgcaaa
caggtgatccaatcgttggaagcctcatggaaacctgacaattgtgaccatgtcatctgc
attgcctgcttctgccaatacacagaggccaccgggctgcctaggtgtgtcgtggcttct
tgtgaatctttgtgccatacagagatgcagcacgagatcagggtgcctcatggcactttg
atctcaacggaagacatggacagccgtaaagggaaaaaccctctcaacgccatgccccaa
gagcttgggcaatgctctcatggggcggatgcaatgataagcaatgagttctactgttcc
atctgcatggagacaatgcacattggggaattctttcccattgacggatgcacacacacc
ttctgcatcagttgtgtgaggcagtacattgctgcaaaggttgaggagaatgtattgtct
attggctgccctgaccgggggtgcaagaaaggtgtgttgcacccagaagcatgccgtgat
gtgatccctttgcagctgttccagaggtggggtgcggcgctctgtgactcatcattgggg
gaattcaaattctactgccccttcaaggactgctcggctctgttggttgatgatcctggc
cctggtgaggcggtgataacaaatgtggagtgcccacactgctgccggatgttctgtgcc
cagtgcaaggttccatggcacgatggtgtgacatgcacagagttccaacgcctcgggaaa
gatgagcgaggcagggaggacctgttgctgaggaaggttgcacaggagagaaagtggcag
aggtgccccaagtgcaagatgtacgtggagaggatcacgggctgcgtgttcatcatctgc
aggtgcgggcactgcttctgctacctttgtgcatccccaatgtctagggatagccattat
tgcaagacctgcaagcgaacctattga
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