Panicum virgatum (switchgrass): 120695743
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Entry
120695743 CDS
T07260
Name
(RefSeq) KH domain-containing protein HEN4-like isoform X1
KO
K21444
poly(rC)-binding protein 3/4
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120695743
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
120695743
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Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
KH_5
KH_Vigilin
MOEP19
Motif
Other DBs
NCBI-GeneID:
120695743
NCBI-ProteinID:
XP_039834896
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Position
2K:50896846..50901239
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AA seq
623 aa
AA seq
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MEVVPTPSVAGGGASSSSTPSPSTKRPTTTLRLLCPSSSAAALRPSRDLHVDHPPVGDEV
VLTVSGPYAPAAAVRAWERVVGHRVEGDEAMGGDEEEEREVTGAVGCRMLAAGGQVGCVL
GKGGKTVERMRQESGAQIRVFRNREQLAPCAGPGDELIHISGSFSQVRKGLLAVSTCLQD
NPRPETSTIPMGRPFGPPVSGTGCPPGMDPHSQRNYLPPPMPDYHTRNYPNNAGAPAPRF
FFEQEIVFRMIILNDMVGSIIGKGGSTIRALQSETGASIKILEPIADSDERIVAISAREN
SDMMHSPAQDAVVRVYSRISEASIDRNSATPARLLVPAQHIGCLLGKGGSIITEMRKFTG
AGIRIFGNEQIPRCAQRNDEMVQVTGSFQSIQDALIHITGRIRDVIIPKPHPSGGMPPYP
PAGNIPLHQPRQEPPPPHPHHSGGMPPYPMHSFRADAPMGPFETGGHRPPLAHSMEHMGA
DRMPYSYGCEQGGPRPFLEQPSPRTWAPEAPNTNIEAPRNMPDAVASTDFRKGPVAGENQ
VATPTSTTTEVIPCKYIGCICGTNGSDLAEIKKMSGASITVHDPKPGDTNSIVVICGDPE
QTKKAQSLIHAFIFCGLCQTDMQ
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggaagtcgtccccaccccgtccgtcgccggcggcggcgcctcctcctcctcgacccct
tccccatccaccaagcgcccgaccaccacgctccgcctgctatgcccctccagcagcgcc
gccgcgctccgcccctctcgggatctccacgtggaccatccgcccgtgggggacgaggtc
gtgctcaccgtctccgggccgtacgcccccgcagcggcggtgagggcgtgggagcgcgtg
gtgggacacagggtcgagggcgacgaggccatgggaggcgatgaggaggaggagagggag
gtgacgggcgccgtcggctgccggatgctggccgccggcggtcaggtggggtgcgtgctg
gggaagggagggaaaacggtggagcggatgcggcaggagagcggagcccagatcagggtg
ttccggaacagggagcagctggccccctgcgctgggccgggggatgaacttatccatata
agtgggagcttttctcaagtacggaaaggactgctagcagtttcaacctgcctccaagat
aatcctaggccggaaacaagcactattccaatgggaagaccatttgggcctccagttagt
ggtactggttgcccccctggcatggatcctcattctcaaagaaactatttaccaccaccc
atgcctgattaccacacaaggaattatccaaataatgctggtgcccctgcacctagattc
ttttttgaacaagagatagtgttcagaatgataattctcaatgacatggtgggcagcata
attggaaaaggtggttccactatccgcgcattacaaagtgaaacaggtgcttctataaag
attttagagcctattgcagattcagacgagcgtatcgttgccatatctgcacgtgagaat
tctgacatgatgcattctccagctcaagatgcagttgtccgggtttactctaggatttca
gaggcatctatcgatagaaactcagctacacctgcaaggcttcttgttccagcacaacat
atcggttgcctgctagggaaaggtggatccattattacagagatgagaaagtttacagga
gctggcattcgaatttttgggaatgaacaaattccaagatgtgcacaacgaaatgatgag
atggttcaggtcactggtagcttccaatccatccaggatgcattaattcatatcactgga
aggattagggatgtcatcattcccaagccacaccccagtggaggcatgcctccatatcca
cctgctggaaacatccctcttcaccaacctagacaagaaccacctccgccacacccacat
cacagtgggggcatgcctccatatcctatgcattctttcagagctgatgctcctatgggt
ccctttgaaacaggtggccatcggccacctctcgcacattcgatggaacatatgggtgct
gataggatgccatattcatacggttgtgaacaaggaggtcctcgtccttttttggaacag
ccatcaccaagaacctgggctcctgaggcaccaaatacaaacattgaagctccaagaaac
atgcctgatgcagtggcatccacagattttagaaaggggcccgtggcaggtgaaaatcaa
gtagctacgccaacaagtacaacgactgaagttattccttgcaagtatataggctgcatt
tgtggaaccaatggcagtgatcttgcagagataaaaaagatgtcgggtgcttcaattaca
gttcacgatccaaaacctggcgatacaaattccatagttgtcatatgtggggatcccgaa
caaaccaagaaagcacagagcttgattcacgccttcattttctgtggtctgtgtcaaact
gatatgcaatga
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