Panicum virgatum (switchgrass): 120695744
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Entry
120695744 CDS
T07260
Name
(RefSeq) ATP-dependent helicase BRM-like isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120695744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120695744
03036 Chromosome and associated proteins [BR:
pvir03036
]
120695744
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120695744
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
120695744
Chromatin remodeling factors
BAF complex
120695744
PBAF complex
120695744
GBAF(ncBAF) complex
120695744
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
QLQ
Bromodomain
AAA_14
Motif
Other DBs
NCBI-GeneID:
120695744
NCBI-ProteinID:
XP_039834927
LinkDB
All DBs
Position
1K:complement(1093022..1103902)
Genome browser
AA seq
2201 aa
AA seq
DB search
MQPSGGPSSSSRSSPASSPRPEQPQPGTPASAQQQSQQQQQQQQQQLGFRSQGMMHHHEQ
QQTYQSGAPHGMMGPGGGGSFPQSSSPMPPFQGQRNLPLSGGPQGMVGGQMHNQMAMQQQ
YLKLAMQQQQQKAAQGMLLQQQAKMNMPGSSSRDQDMVNNPAKMQELMALQMFKRQAEHI
QQAEKQKEQGQPSSNEQRTGDMRPPMPPQGVPGQQLSSVGMIRPMQPMQGQVGMGSAGGG
PLTPLQFQAIQAWAKENNLDLSNPTNMSVISQLLPIWQSSRMAAMQKQNEAMAAQQQATS
SQMNSDSPGHGNVASQGAPLKARQPIPLSSVSGGEEAKVVNSSNLQLQQQLSAHNRDGSN
AVRPPMTVGNGSQTMHIPQSSGHVNKVPEQSNPKNVLANSEAVQMQHARQMQQLNQAAAP
TAIPGETGGSQAPTPSARSQTGQTGFTKNQLHVLKAQILAFRRLKRGDRTLPPEVLELIV
TGRPPDSQGQQISGPQATPNRERPGVSSADEHGRQMETGDKAPEKQALLKGPCLPKVEVS
ASEDKASPASGPGPMQVMKASPKESLKIGPVSVPEHSNNTVIKSEQDLERGIQRTPGRSD
YNAERGKSLPAESGSVDAEQTKRAASTSSAPVPRDVPRKYHGPLFDFPSFTRRHDSLGPT
NYNSNLSLGYDVKDLLAQEGMIVLGKKREDNLKKISGLLAINLERKRIRPDLVLRLQIEE
KKLKLLEHQARLRDEVEHEQQEIMAMPDRIYRKFVRQCERQRVDLARQVQQMQKASREKQ
LKSIFQWRKKLLEAHWAIRDARITRNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDV
ERYRQILWEQQTSVPGDAAQRYNVLSSFLTQTEEYLYKLGGKITATKSQQQVEEAANAAA
AAARAQGLSEEEVRAAAQCAGQEVMIRNTFSEMNAPRDNTSVNKYYTLAHAVSERVTKQP
SLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPH
LIIVPNAVLVNWKSELLNWLPSASCIFYVGAKDQRQKLFSQEVMAMKFNVLVTTYEFVMF
DRSKLSRVDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLN
LLLPEVFDSSKAFQDWFSKPFQRDGQTHSEEDDWLETEKKVIIIHRLHQILEPFMLRRRV
EDVEGSLPRKDSIVLRCRMSAIQGAIYDWIKSTGTIRVDPEDEKKRAQRNPMYQFKTYKN
LNNKCMELRKVCNHPLLSYPFLNHGKDFVIRSCGKLWNLDRILIKLHRAGHRVLLFSTMT
KLLDIMEDYLQWRRLVYRRIDGTTSLEDRESAIVDFNRPNSDCFIFLLSIRAAGRGLNLQ
SADTVVIYDPDPNPQNEEQAVARAHRIGQTREVKVIYMEAVVDNISSYHKEDELRNGGSG
DLEDDLAGKDRYMGSIESLIRSNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHD
EERYQETVHDVPSLQEVNRMIARTEREVELFDQMDEDFDWTGDMVKHHQVPKWLRVSSTE
VDAVVASLSKKPSRNMSSGGIALDTNDIPEKRRGRPKGTGKYSIYREIDDEDLEESDEDS
EERNTTTPLPDDGEIGEFEDEEDNDDLVPDNKDESEEEEPIHDGRYNFTDGLGSRKANRM
EDAGSTGSSSGSRRLPPPAPSSSSKKLRSLSALDARPGSLSRRTPDDLEEGEIAMSGDSH
MDVQQSGSWNHERDDGEDEQVLQPKIKRKRSIRVRPRPNAEKQEDRSGGEGVFPQRGTHL
AFQGDCDYDSQFKSDLGARLFADPAARQQDAVHPIFKQKRNMPSKKVSPASRTGKLTYLS
GSGEGSAERSKENWSSKAIDSASPEYRGTKMSDSMQRKCKNVISKLWRRIDKEGHQIIPN
ISSWWRRNENSSFRGPAGSTLDLQKIEQRVDGFEYSAVTEFIADMQQMLKSVVQHFSYRP
EVRIEAETLHNLFFNIMKIAFPDSDFSEAKNAMSFSNPGGAASGAAGQSTKQAALGHKRR
ASTSEAEQHGSGHSRHNQPSEVPSRTHSSRSERDSRHSGSGNRDQLPDGAGLLHPSDMFI
VKKKRQERPRNSIGSPSSSGRAGPLSPTNPGRLGAVPSPRGARMPFQRDAHPSQQSMHST
VWGAHSDHGGSSSTPGIGDIQWAKPAKRQRTDTGKRRPSHL
NT seq
6606 nt
NT seq
+upstream
nt +downstream
nt
atgcagcccagcggggggccctccagcagctcgcggagctcgccggcgagctcgccgcgg
ccggagcagccgcagccgggcaccccggcgtcggcgcagcagcagtcccagcagcagcag
cagcagcagcagcagcagctagggtttaggagccagggaatgatgcatcaccatgaacag
cagcaaacataccaatccggtgcaccacatggcatgatgggaccaggcggcggcggtagc
ttccctcagtcctccagcccaatgccgccgtttcagggtcagaggaacctgccgctatct
ggcggaccgcagggcatggttggaggtcagatgcacaaccagatggcaatgcagcaacaa
tacctgaagcttgcgatgcagcagcagcagcagaaggcggcccagggtatgctcctccag
cagcaggccaagatgaatatgccggggtcatcgtcaagagaccaagatatggttaacaac
cctgccaagatgcaagagcttatggcccttcagatgtttaagcgacaagctgaacatatt
cagcaggctgagaagcagaaagagcagggacaaccaagcagtaatgagcaaagaactggg
gatatgaggcctcctatgcctcctcaaggagtacctggacagcagttgtcgtcagtgggt
atgatcaggcccatgcagccaatgcaaggccaagtgggcatgggcagtgccggtggtggc
ccattaacaccattgcagtttcaagccatccaagcctgggcaaaggagaacaacttagac
ctgtccaatcctacaaacatgagtgtgatttctcaactcctgccgatctggcagtctagc
aggatggcagccatgcagaaacaaaatgaggctatggctgcgcagcagcaagcaacatcc
tcgcaaatgaacagcgattccccagggcatggcaatgttgccagtcagggtgccccattg
aaggccaggcagcccattcccctgagctcagtttctggtggagaagaggctaaggtagtg
aattcgagcaacttgcagttgcaacaacagttatctgcccataacagggatggctcaaat
gctgtgaggccacctatgacagtgggtaatggttcacagacgatgcatatcccacagagt
tctgggcatgtgaataaggttcctgagcaatccaatccaaaaaatgtccttgcaaattct
gaagcggtgcagatgcagcatgcaagacagatgcagcagcttaaccaagctgctgccccc
acagcaatccctggtgaaacaggagggtcacaggccccaactccaagtgcccggtcgcaa
acggggcaaacgggtttcacaaaaaatcaacttcatgtactcaaagctcagatattagct
tttcggcgtttgaagcgcggtgatcgaacactcccgccagaagttcttgaattgattgta
actggacggcctcctgattcacaagggcagcagatttctggacctcaggcaacacctaac
cgtgaaaggcctggtgtaagcagcgcagatgaacatggaaggcaaatggagactggtgat
aaagctcctgaaaaacaggcattgttgaagggaccatgtttgccaaaggtggaagtttct
gcttcagaagataaagctagtcctgccagtggtcctggtcccatgcaagtgatgaaagct
tctccaaaagagtctcttaaaattggaccagtttcagtaccagagcatagtaacaatact
gtgattaaatccgagcaagatctagaacggggtatccagagaacacctgggagaagtgat
tacaatgctgagaggggtaaatctttaccagcagaaagtggttcagtagatgctgagcag
acaaaaagggctgcctcgacaagcagtgccccagtcccaagagatgttcccagaaaatac
catggtccgctattcgatttcccgtctttcactaggaggcacgattccttgggacctaca
aattacaacagtaatctgtcactaggttatgatgtgaaagatttattagctcaggaagga
atgatagttcttggtaagaaacgtgaggataacttaaaaaagataagtggtttgcttgct
attaatctagagaggaaaagaatccgacctgatcttgtcttgaggctacagattgaagaa
aagaagctcaaactcctagaacatcaggctcggctccgggatgaagttgagcatgagcaa
caagaaataatggcaatgccagataggatatacagaaagtttgtcagacaatgtgaacgt
caacgtgttgaccttgcaagacaagttcagcagatgcagaaagcctcgagagagaagcag
ctgaaatccattttccagtggcgcaagaagcttttggaggcacattgggctattcgtgat
gctcgaataactcgtaatcgaggggtggccaagtaccatgagaggatgttgcgagaattc
tcaaagaggaaagatgatgataggaacaaaagaatggaggcattgaaaaacaatgatgtg
gaaagataccgtcaaattttgtgggaacagcaaacgagtgttcctggagatgcagctcaa
agatacaatgttctatcttctttcctgactcagactgaagagtacctttataagcttgga
ggaaaaataaccgctaccaagagtcagcaacaagtagaagaagcagcaaatgctgcagct
gcagctgcacgggcacagggtctatctgaggaagaagtgagggctgctgcacaatgtgct
ggtcaggaggttatgataaggaacacattctctgagatgaatgcaccaagggataatacg
tcagttaacaagtactacactttagctcatgctgtcagtgaaagagttaccaagcaacca
tcactgttgcgagcaggaactttaagggactaccaactggtgggcctacagtggatgctt
tctttgtacaataataagttgaacggtattttggctgatgagatgggtcttggcaagact
gtgcaggttatggcattgatcgcatacctgatggagtttaaagggaattatggcccacat
ctcataatagtgccaaatgctgtcttggtcaattggaagagtgaactgctaaattggttg
ccatcagcatcttgcatattttatgtcggtgcaaaggaccaaaggcagaagctgttctct
caagaggttatggccatgaaatttaatgttcttgtaacaacatatgaatttgttatgttt
gaccgttccaagctttcaagggttgattggaagtacattataattgatgaggcgcagcgg
atgaaggacagagactcagtcttggcgcgtgatcttgatcgctatcgttgccaacgacgt
ctccttctcactggtactcctctacagaatgatctcaaggagctctggtccctcttgaac
ctgttgcttccagaagtatttgacagtagtaaggcatttcaagattggttctctaagccg
tttcagagggatggtcagacacatagtgaagaagatgattggcttgagacagagaagaaa
gtaataatcattcacaggctgcatcagattttggaacccttcatgctacgtaggcgtgtg
gaagatgttgaaggctcacttccacggaaggattctattgttttgaggtgtagaatgtct
gccattcaaggagctatatatgattggatcaaatctactggtactattagagttgatcct
gaagatgagaaaaaacgtgcacaaagaaatcccatgtaccagttcaagacatacaagaat
ctcaacaacaagtgcatggagctaagaaaagtttgtaaccatcctctcctgtcatatcca
ttcttgaatcatgggaaagattttgtgatcagatcttgcgggaagttgtggaatcttgat
agaattttaattaagcttcatagggcaggccatcgtgttctcctttttagcacaatgaca
aaacttcttgacatcatggaagactatttgcaatggaggcgacttgtttacaggcgaatt
gatggaacaacaagcttggaagatcgagagtcggcgattgttgacttcaacaggcctaat
tctgattgttttatattcttgcttagtattcgtgctgctggtaggggtctgaatcttcag
agcgcagacactgttgtaatatatgaccctgatccaaatccacaaaacgaagagcaagca
gttgctagggcccatcgtatagggcagactagggaggtgaaggttatttacatggaggct
gttgttgataacatatctagttatcacaaagaggatgagttgagaaatggagggagtgga
gatttggaggatgatcttgctgggaaagacaggtacatgggatcaattgagagtctcatc
cgcagcaatatccaacaatacaaaattgatatggcagatgaggtcattaatgctggtcgt
tttgatcaaagaacgacccatgaggaaaggcggatgactttagagacactcctgcatgat
gaagagagatatcaagaaactgttcacgacgtgccttcattacaggaagtgaaccgaatg
attgctaggactgaacgtgaagttgaactttttgatcagatggacgaagacttcgattgg
actggggatatggtgaaacatcatcaggttccaaagtggcttcgtgttagctctactgaa
gtagatgctgttgtggcaagtctatccaaaaaaccgtctagaaatatgtcatctggtggc
attgctttagacactaatgatatacctgagaagagaagggggcggccaaagggtactggc
aagtattccatctacagggagattgatgatgaagatcttgaagaatctgatgaagattct
gaagagaggaataccaccacacccctgcctgatgatggggaaataggggaattcgaagat
gaagaggacaatgatgatttggtacctgataacaaggatgaatcagaggaagaagagcct
atccatgatggcaggtacaattttaccgatggattaggtagcagaaaagctaacaggatg
gaagacgctggttccacaggttcttcttctggaagcaggagattaccaccgcctgcacct
tcttcatcttcgaaaaaattgcggtccctatctgctctggatgcccgccctggttctttg
tcaaggagaactcctgatgacctagaggaaggtgagattgcaatgtcaggtgactcacat
atggacgtccagcagtcagggagctggaatcatgaacgtgatgacggcgaggatgagcaa
gtgttgcaaccaaaaataaaacgcaaaaggagtattcgtgttcgtccaaggcctaatgca
gaaaagcaggaagatagatctggcggagaaggggtcttcccccagcgtggtactcatctt
gcatttcaaggagattgtgattatgattcacaatttaagtctgacttaggtgcccgtctt
tttgctgatccagctgccaggcagcaagacgcagttcatcctatattcaaacagaagcgc
aacatgccatctaagaaggtttcgcctgcttctaggacagggaaattgacttacttgtct
ggatctggtgaaggatctgctgaacgctccaaggaaaattggagcagtaaggccattgac
tctgcttccccagagtaccgcggcacaaagatgtctgacagtatgcaaagaaagtgcaag
aatgtgataagcaagctatggaggaggattgacaaagagggtcatcaaatcatacctaat
atatcttcttggtggcggaggaatgaaaattcctcattcagaggtccagctggtagcacc
cttgacctacagaaaattgaacagcgagttgatggattcgagtatagcgctgtaactgag
ttcatagcggacatgcagcagatgttgaagagtgtggttcagcatttcagctataggcct
gaggtccgaatagaagctgagaccctccataacttatttttcaacataatgaagattgcc
ttcccagactcagacttcagcgaagctaagaatgcgatgtcattttcgaatcccggagga
gctgcaagtggtgctgctgggcagtcgacaaagcaagctgctttgggccataagcgccga
gctagcaccagtgaagcagagcagcatggttcgggacatagcaggcataatcagcctagc
gaggttcctagccggactcacagttctagatctgagagagattcgaggcattctggatct
ggcaacagggatcaactcccggatggtgctgggttattgcacccaagcgatatgttcatt
gttaagaagaaaagacaagaacggccaaggaacagcattggttctccatctagctcaggc
cgagctggaccgctctcgccaaccaaccctgggcggctgggcgcggtgccctcacccaga
ggtgccaggatgccattccaaagggatgcgcatccatcccagcagtcgatgcattctact
gtttggggtgcgcactcagatcatggggggagttcctcgacacccggcattggggacatc
cagtgggccaagccagccaagcgacaaaggactgacaccggcaagaggcggccgagccat
ttgtga
DBGET
integrated database retrieval system
