Panicum virgatum (switchgrass): 120695763
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Entry
120695763 CDS
T07260
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 15-like isoform X1
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120695763
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120695763
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120695763
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120695763
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120695763
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
zf-MYND
Motif
Other DBs
NCBI-GeneID:
120695763
NCBI-ProteinID:
XP_039834926
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All DBs
Position
1K:complement(13361176..13376729)
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AA seq
976 aa
AA seq
DB search
MLQPREADVPVLFLVFIVLPVVAYFLLGRWHEAASKKARVSVLAQRAAEEAFRVETMACP
DVMPPGPSLRTMPYFRPAPSLRQEFHECATCHAPAKTRCSRCKSVRYCSGKCQIIHWRQG
HKETCQKWLGSGSSSFGGSGPEASEQMPFLTNLNSPLPGGDIHLRDMNFDTLSEPSFPTT
DGYNLDTDPFPTDRSNLNKSNQGLHTSENGAVGVSYEKNNYNVDDETRSSEILSGNKVSN
NYFGCADVTSGNGDATYPVKNNAQQPSNCAPEIRKRTKSSITVYEPDMGIYLTSDMVSSC
EGPYASASEPLQRSLSSGRTIGKANLVNKRPSCPSGKVTSSQKSQERVSTSYQTDGHEKN
PCNKNDQRSIQTTESTSNNLQGCNGISKFGVSKVEVLKKPSKFLKTSLVGLINDNKRNKV
LFPYEDLVKFFQYEARGISPRGLFNCGNSCYANAVLQCLMCTKPLMIYLLLRLHSKDCCS
KNWCLMCELEQYASTLRESGGPLSPSRILSNLRNIGCRLGGGTQEDAHEFLRHLVMSMQA
ACLDGLGGEKHVEPSLQETTVIQQMFGGRLKSKVKCLRCYHESERYENIMDLTLEIHGWV
ESLQDALTQFTAPEDLDGENMYKCGRCSAYVKARKQLSVHEVPNILTVVLKRFQTGKYGK
INKCVTFPEMLDMVPFVTGSGDNPPLYFLYAVVVHVDTENASFSGHYISYVKDMQGTWLR
IDDSEVQVVSVNQVMSEGAYMLFYLRSFPRPPRIYIEKGLLPVSTTVKRHTSKSSKGSKH
ERKQTELLFAGSDQTYGIYDFRPDGEGYMQDQPAEFRSRDFHHADDSFADSVSTDFSEAT
SSEWSLFTSSDESSFTTESTRDSFSVVDYGDNAGLDPICSIFGPCYAPEHPPGNFVSSTR
FSPSNPQTRYFSESTDFVSDSSMPTHPHGNVHRGRHPDRACASSAEPLASAHQRSGYGRY
PLSRDGFVQTSGFCQM
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgctccaaccaagggaagcagatgtgcctgtgctctttcttgtcttcattgtacttcct
gtggtagcttattttcttcttgggagatggcatgaagctgcaagtaagaaggcaagggta
agtgtgctggcgcagcgagctgcagaagaagccttcagagtggaaacaatggcctgcccg
gatgttatgcctccagggccttctttgagaactatgccctatttcaggcctgctccttca
ttaagacaggaattccatgaatgcgcaacttgccatgcccctgcaaagactcgctgctcc
agatgcaagtctgttagatactgctctggaaagtgtcaaataatacactggaggcaagga
cataaggaaacatgccaaaaatggcttggtagcggttctagcagctttggtggctctggc
cctgaggcttctgaacagatgcccttcttgactaacttaaattcacctcttccgggtggt
gacattcacttgcgcgacatgaactttgatactttatcagagccatccttccccacaact
gatggctacaatctagatactgatccatttccgacagacagaagcaacttgaataaatca
aatcaaggtcttcatacgagcgagaatggtgctgttggtgtatcttatgaaaagaacaat
tacaatgttgatgatgaaacccgctcttccgagattttatcaggaaacaaggtgtcaaac
aactattttggttgtgcagatgtgacgagtggtaatggtgatgcaacttatcctgtcaaa
aataatgcacaacaacctagcaattgtgctcctgaaataagaaaacggacaaaatcaagc
atcacagtttatgagcccgacatggggatctacttaacttctgatatggttagttcctgt
gaggggccatatgcttctgccagtgagccgctgcaaaggagtttgtcatctggaagaact
attgggaaagcaaatttggtgaacaagagaccttcatgcccatcaggtaaggtgacttca
tcacagaagtcacaggagagggtgtctacatcatatcaaactgatggccatgagaagaac
ccttgcaacaaaaatgaccaaagatccatccaaacaactgaatcaacaagcaacaaccta
caaggatgcaatggaatctcaaagtttggagtatccaaggttgaagttttaaagaaaccc
tcaaaatttctcaaaaccagccttgtgggattgatcaatgataataagaggaataaggta
ttgttcccatatgaagatcttgtcaagttttttcagtatgaagcacggggtatttctcct
agaggtcttttcaattgtggaaacagctgctatgctaatgctgttctacaatgtctgatg
tgcacaaagccactgatgatctaccttcttctgagattgcattctaaagactgttgctca
aaaaattggtgccttatgtgtgaacttgagcaatatgcctcaactttacgtgaaagtggt
ggacccttatctccaagtagaattctttctaatttgaggaatatcggatgtcgcttgggt
ggtggaactcaggaagatgctcatgagtttttaaggcatcttgtgatgtctatgcaagca
gcgtgcttggatgggcttggtggtgagaagcacgtagaaccaagtttgcaggaaacaaca
gtgatacagcagatgtttggtggccgtcttaaatccaaggttaagtgcctcagatgctat
cacgagtctgaaagatatgagaatataatggatcttactttggagattcatggatgggtg
gagtccttgcaagatgctttgacacaattcactgctcctgaggatttagatggcgagaat
atgtacaaatgtggaaggtgttctgcttatgtcaaagctaggaagcaactcagcgtgcat
gaggtgccaaacatattaacagttgttcttaaaagatttcagacaggaaaatatggcaag
atcaacaaatgtgtcacgtttcctgaaatgttggacatggttcctttcgtgactggctct
ggtgacaacccccctctttatttcttgtatgctgtcgttgtacatgtggatacagaaaat
gcatcattctctgggcactatatatcatatgtcaaagatatgcagggcacatggttaaga
attgatgactcagaggtccaggttgtatcagtgaatcaagttatgtcagaaggtgcatat
atgcttttctacttgaggtcttttccccgaccaccaaggatatacattgagaaagggctc
ttgcctgtttcgacaaccgtaaagcgtcacacatcaaaatcctccaagggctctaaacat
gagcgcaagcagacagagctgctctttgctggaagtgatcaaacctatggtatatatgat
tttagacctgatggagaaggctacatgcaagatcagcccgcagagttcagatccagagat
ttccatcacgccgatgattcctttgcagactcagttagcacagacttctcggaagctaca
tcaagtgaatggtcactgtttaccagctctgatgagtcctcatttaccactgaaagcact
agagattcattcagtgtcgtggactatggagacaatgctggccttgatccgatctgctct
atatttgggccatgttatgctccagaacatcctcctgggaatttcgtctcatctaccagg
ttctcgccttctaatccacaaacaaggtacttttcagagagcacagactttgtctcggac
tcttccatgccgacccacccgcacggcaatgtacatagaggaaggcacccagatagggca
tgcgcctcatcagccgaacctcttgcttcagcacatcagcggagcgggtatggtcggtat
ccccttagtagagatggttttgttcaaacatctggattttgccaaatgtaa
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