Panicum virgatum (switchgrass): 120695786
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Entry
120695786 CDS
T07260
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 2-like isoform X1
KO
K11844
ubiquitin carboxyl-terminal hydrolase 16/45 [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120695786
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120695786
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120695786
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120695786
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120695786
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120695786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
Motif
Other DBs
NCBI-GeneID:
120695786
NCBI-ProteinID:
XP_039834952
LinkDB
All DBs
Position
2K:complement(51390627..51396069)
Genome browser
AA seq
1059 aa
AA seq
DB search
MGKKVKAKPKNLRKAQERGPSASSSDVGPGDAALQDASLSAEEATASASGREHCGHYSRD
SAHLDKVLLEILSSKHVASCEHCREDAPRKKGGAGSKEKGGKKKKGGASKGAAAKAQAKA
EKSDMWVCLDCGRHFCGGAVEDTKPYGHARRHAKQDRHWWAARYDDPTVAYCLSCEKEVP
IEMPKLETVVAEVVDAKVVGIEDTDSSGLVNPHANVIKGLPNLGNTCFFNAVLQNLLALD
RLRRKMLGPDVPTGALAMSLKKLFAETSASNHAGGALSPKNLFSSICSKYPQFRGYQMQD
SHELLRCFLDGLRTEETDARKLVEEASDAGVPTIVDSIFGGQLSSTVSSTECSHSSVKHD
QFLDLSLPVPSRRPPTKSVSSPPAKKIKQSIRDRNKSRRYGKTPARASPSVESNKEQIQT
ITACNNSQIPDSELKQVVSEKEPEPSICSESCASVSNIEQKATSNAVDSICWLDYLADAD
ETKSEILDSADSTEAGQIWESRDAAHDPLHPQDDALPKEQILGSEHSGENTVDDAPLLQP
VILLPYKEFGTTAKEMDETIENSQNSACVVPSPDVSPVTENNIQPAYGGDVEQDDYGIGD
MFNEPEVTSEVKKENGKAEDIDVMAWSSNSADDEVDDSNAPVSVEGCLALYTEPELLSEP
WLCEHCTNAARLSADEAKNVVEMKDGAEIKDGEEMMAGGDVRQDGEELIMRCSKEDIDQV
MNTDGCKKDIDQVMATDDCSDNLHSGIHCKEGGCVNPSLADPEQNCNGNFPDTENTTTQR
TVAAFTVEKTEPSNSQTDDKEQGVDLRSLELESSSLNKQQHDADIQFNDGHNVDITADST
SAPVSCDSDSVSFSATNNVEAERVGGAEEVVSSSLPSDAQKTLQSAKDNEDVITRNQGRR
KRMKMVGKAQQLEDSQNKKKEDETKVFRAAMRRILISKAPPVLTINLNRFSQDSHGRYKK
LKGHVCFKEMLDIQPFMDPRCKENNNTAYRLVGVVEHLGTMTGGHYVAYVRAAKIGGWQQ
QSSGSKSWFYASDGQVREASLEEVLNCEAYILFYERVAD
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaaggtgaaggctaagccgaagaacctgcgtaaagcgcaggaacggggtcct
tcagcctcatcctcagatgttggacctggcgatgcggcattgcaggacgcaagcctctca
gcagaagaagcaactgcgtcggccagtggcagggagcattgcggccactacagccgcgac
agtgcccatttggacaaggtcctcctggagatcttgtcttccaagcacgttgcgtcgtgc
gagcattgtcgggaggatgccccgagaaagaaaggcggtgctggaagcaaggagaaaggt
gggaagaagaagaaaggaggcgcctccaaaggcgctgctgccaaggcacaggcaaaggct
gagaaaagcgatatgtgggtctgcttggactgtggtcggcatttttgtggtggtgcagta
gaggataccaagccctatggccatgccagacggcatgctaagcaggaccggcattggtgg
gctgcaaggtatgatgacccaacagttgcttattgcttgtcatgtgaaaaggaggtgcca
attgagatgcccaaattagagacagttgtggcagaagtagtggatgctaaggtggttggt
attgaggatactgattcatcaggtttggttaaccctcatgctaatgtgatcaaagggctg
ccaaatcttggaaacacatgcttcttcaatgcagtgctgcagaacctccttgctcttgat
aggttgcgtaggaagatgttaggaccagatgttcctacaggagcacttgctatgtcactg
aaaaagctctttgcagagacaagtgcttcaaaccatgcaggaggggcacttagcccgaag
aatctcttctcaagcatttgctcaaaatatccacagttcaggggctaccagatgcaggat
agccatgaattactccgctgttttcttgatggtttacgcactgaggaaactgatgcacgg
aagctagtggaagaagcttcagatgcaggggtccccacaattgtcgactccatctttggg
ggtcagctgtctagtactgtgtccagcacagaatgctcacacagttctgtgaaacacgat
caattccttgatctctcactcccagttccatcacggaggcctcctaccaagagtgtttca
tccccacctgcaaagaagatcaaacagtccatacgagataggaacaaaagtcgcagatat
gggaagactcctgctcgagcatctccttcagtggagagtaataaagaacagattcaaaca
attactgcgtgcaacaattcccaaattcctgattcagaactcaaacaggtagtcagcgag
aaagagccagagccctctatctgcagtgagtcatgtgcttctgtgtctaatatagaacaa
aaggccacttcaaatgcggtggatagcatatgctggttggattaccttgccgatgcagac
gaaacaaaatctgagattcttgattctgcagattctactgaagcaggacagatttgggaa
agtagggatgctgcacatgatcctttacaccctcaggatgatgccctacctaaagagcag
atcttgggttctgagcactcaggtgagaacactgttgatgatgctcccctcttgcagcct
gttatcttacttccttataaagaattcggtaccactgccaaggaaatggatgaaaccata
gaaaattcacagaattcagcatgtgtcgttccttctccagatgtttctccagtaacggaa
aataatattcaacctgcatatggtggagatgtagagcaagatgactatggtattggtgat
atgttcaatgaaccagaagttacttctgaagtcaagaaagaaaatggtaaagctgaagac
attgatgtgatggcttggagtagtaatagtgctgatgatgaggtagatgatagtaatgct
cctgtatcagttgagggctgcttggctttgtatactgaaccagagctactatctgaacca
tggttgtgtgagcactgtactaatgctgcacgcctaagcgctgatgaagcaaaaaatgtc
gtggagatgaaggatggtgctgaaataaaggatggtgaggagatgatggccggtggtgat
gtaagacaagatggcgaggagttgatcatgaggtgcagcaaagaggacattgatcaggtt
atgaatactgatggttgcaaaaaggacattgatcaggttatggcaactgatgattgctct
gacaatttacattctggtatacattgcaaggaaggaggatgtgtgaatccttctttggct
gaccctgaacaaaactgtaatggtaattttccagacacagaaaatactactacacagaga
actgttgcagcgttcacagttgagaagactgaaccgtcaaatagtcagactgacgataag
gaacagggtgtggatttgagaagcttagaactggagtcctcatctttgaataagcaacaa
catgatgcggatatccagtttaatgatggacataatgtggatataaccgctgattctaca
agtgcaccagtgagttgtgatagtgattctgtgtctttcagtgcaactaacaacgtagaa
gctgaacgtgttggtggtgctgaagaagttgtttctagtagccttccatcggatgcacaa
aaaaccttgcagagtgcaaaagataatgaagatgtcatcacaaggaatcaaggcaggagg
aagcgaatgaagatggttggcaaggcacagcaattggaagatagccaaaataagaagaaa
gaggatgagacaaaggttttcagagctgcaatgagaagaattcttataagcaaggctcca
cctgtattgacaattaacttgaacagattcagccaggattcccatggtcgatataagaaa
ctgaaagggcacgtgtgctttaaggagatgcttgatatacagccattcatggacccaaga
tgtaaggagaacaacaacactgcttatcgtcttgttggtgttgtcgagcacttgggaacc
atgacaggtggtcattatgttgcatacgtgagagctgccaagattggaggttggcagcag
cagagcagtggctcaaagtcttggttttacgcaagcgatggacaagtgagagaagcctct
ctggaggaagttctgaactgcgaggcttacattctgttctatgagagggtggccgactaa
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integrated database retrieval system
