Panicum virgatum (switchgrass): 120695879
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Entry
120695879 CDS
T07260
Name
(RefSeq) protein argonaute MEL1-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120695879
03036 Chromosome and associated proteins [BR:
pvir03036
]
120695879
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120695879
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120695879
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
120695879
microRNA pathway
RISC loading complex
120695879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Piwi_N
Motif
Other DBs
NCBI-GeneID:
120695879
NCBI-ProteinID:
XP_039835026
LinkDB
All DBs
Position
2K:complement(8021255..8028759)
Genome browser
AA seq
1022 aa
AA seq
DB search
MDSRGAGGGGGRGGAGGRGPGGRGGERGGRVGVGGGGAGRRQQPHGRGGGAGPQQPYGRG
EGGGRGAGGGGYPQKPLGRREGAAPGRGGVGAAAPVRPAAPRPVAPPVAVPAAAASTSAR
PPAPASGLAPAPPVPAAAAATDLAGGMGRLAVAGADPAAPPAPPAAARSAPAQQPPAAPP
VSSKGIPHPARPGFGKLGRRVVVRANHFLVEVSDMDICHYNVSISPEPKARKINRVVLLE
LIKVHGATSLANKMPAYDGSMSMYTAGELPFKSMDFVVKLGRREIEYKVTIRYAARANLY
HMQQFLNGQQRDSPHDTIQALDVVMRESPSLNYVTVSRSFFSKQFGAAKDIGDGLECWRG
YYQSLRPTQMGLSLNIDTCSTSFYKPIPAVQFVKECLLVTNPTQPFSDRNRLKIKKALRG
VRVETTHQQGKRSIYKITGVTSVPLEQLSFPCNDGTQLTVVQYFKQRYNYQLQYTAWPCL
QSGNDSKPIYLPMEVCQIIEGQKYSRKLSDTQVASILKATCKRPQERENNIIQMVGHNNY
SADRLAQVFGITVSNQMANVQARVLPPPLLKYHESGREKTVAPSVGQWNMINKKMVNAGT
VHSWTCLSFSRMPRHVVDGICNDLVQMCNSIGMVFNPRPVIEVQSASPNHIEAALRDVHT
RAPNLQLLIVILPDVSGHYGKIKRLCETELDIVSQCINPRPNKNKQYFENVALKINVKVG
GRNTVLERAFEPSGIPFVSDVPTIIFGADVTHPVAGEDSSASIAAVVASMDWPQVTTYKA
LVSAQAHRQEIIQNLFWTATDPEKGTPVNGGMIRELLSSFYKRTGRKPERIIFYRDGVSE
GQFSHVLLHEMDAIRKACASMQRDYLPPVTFVIVQKRHHTRLFPEVHGRRDLTDRSGNIL
PGTVVDSSICHPNEFDFYLCSHAGIQGTSRPAHYHVLYDENRFSADALQMLTNNLCYTYA
RCTRSVSVVPPAYYAHLAAFRARYYDEQAEGTDGASVVSGGPAAVRRLPQVKDKVKEVMF
FC
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcgtggcgcgggcggcggtggcgggcgcggtggtgccggagggcgcggccct
ggtgggcgaggcggcgagcgcggcggccgcgtcggcgtcggcggcggcggcgcgggaagg
cgccagcagccccacggccgcggcggcggggcaggtccccagcagccttacggccgcggc
gaaggcggaggccgaggagccggcggcggcgggtacccgcagaagccgctcgggcgcagg
gagggcgcggccccgggccgcggcggcgtgggggcagcagcacccgtccgtcccgccgcg
ccacgtcctgtagcgccgccggtggccgttcccgcggcagccgcctcgacttccgcgagg
ccacccgcgcccgcgtcgggtctggcgccagcgcctccagtccccgccgcggcggctgct
actgacttggctggaggcatggggaggctggccgtggcgggcgcggaccccgccgctcct
cccgcgcctccggctgcggctagatccgcgcccgcgcaacagccgccggcggctccgccg
gtatcgagcaaggggatcccgcacccggcgcgcccggggttcggcaagctggggaggagg
gtcgtcgtgcgcgcgaaccacttcctcgtcgaagtgtccgacatggacatctgccactac
aacgtttcaatcagtcctgaaccgaaggcaagaaaaatcaacagggtggtgcttttggag
cttatcaaggtgcacggtgcgacatctctagccaacaagatgcctgcatatgatggaagc
atgagcatgtacactgcaggagagctgccattcaagtcaatggattttgttgtcaagttg
ggacgccgagaaattgagtacaaagtgacaattcgatatgcggcacgggcaaatctgtac
cacatgcagcagttcctcaacggtcagcaaagggactcaccacacgacacaatccaagca
ctcgacgttgtaatgagggagtcgccttctctcaattatgtcactgtttcaagatccttc
ttctccaagcagtttggtgctgcaaaggacattggtgatgggttggagtgttggagagga
tattatcagagcttgcgccccactcaaatgggcctctcgttgaacatcgacacatgctcg
acttcattttataaacctatccctgcggtacaatttgttaaggagtgtctgctggttaca
aaccccacacagcctttttcggacaggaatcgtttgaagattaagaaagccctgcgtgga
gttcgtgttgagaccacacatcagcagggcaaaaggagcatctacaagataactggggtt
acttctgtcccactggaacaactgagctttccttgcaacgatggcactcagctaactgtt
gttcaatacttcaaacaacgttacaactaccagttgcaatacactgcttggccctgcctg
cagtctggcaatgattctaagccgatatatttaccaatggaggtctgtcaaattattgaa
gggcagaaatactctaggaagctcagtgacacacaggtggccagcatactaaaggcaacc
tgtaaacggccccaagagagggaaaacaatatcatccagatggttggccacaacaactat
tcagctgataggctggcacaagtgttcgggatcactgtttccaatcagatggccaatgtg
caagctcgtgtgctgcctccacccttgttgaaataccatgaatctggaagggagaaaact
gttgcaccaagcgttgggcagtggaatatgattaacaagaaaatggtcaatgctggaacc
gttcacagctggacttgtttgagcttttcacgaatgccacgtcatgttgtagacggaata
tgcaatgacttggttcagatgtgcaactccattggcatggttttcaatccaaggccagtg
atagaagttcagtcagcttctcccaaccacatagaagctgctctaagggatgttcacacg
agggctcccaatctccagctgcttattgttattcttccagatgtttctggtcattatggg
aaaattaagaggctgtgcgagactgaacttgatatagtatctcagtgcataaatccaagg
cccaataaaaacaagcagtatttcgaaaacgttgcccttaaaatcaatgtgaaggttgga
gggcggaatacagtgcttgagagagccttcgagcctagcggaataccttttgtctcagat
gtaccaacaatcatttttggtgctgatgttacccatcctgtagcaggcgaagactcatcg
gcatctattgcagctgtggtggcatccatggactggcctcaagtaacaacctataaagct
ctggtctctgctcaagcacataggcaggagattatacagaatctcttctggactgctaca
gatccagagaaaggcaccccagtaaatggtggaatgataagggagctgctgtcttcattc
tataagaggactggccgaaagcctgaaaggattattttttacagggatggagtaagtgaa
ggacagttcagccacgttttgctccatgaaatggatgcaattaggaaggcttgtgcctct
atgcaacgtgattatctacccccagtgacatttgtaatagtacagaaaaggcaccacaca
aggcttttccctgaggttcatggaaggcgtgatctcactgatagaagtggaaacattctt
cctggaactgtggttgatagcagcatttgtcatcccaacgagtttgatttctacctttgc
agccatgctggaatccagggaacaagcaggccagcacactatcatgtcctctatgacgag
aaccgtttctcggctgatgcgctgcagatgctaactaacaacctgtgttacacatatgca
cgctgcacgcgttctgtctcagttgttccaccggcctactacgctcacctggccgcgttc
cgcgcgaggtactacgacgagcaggcagagggcaccgatggagcctctgttgtcagtggc
ggtccagctgcggtccgccggctcccgcaggtcaaggacaaagtgaaggaagtgatgttc
ttctgctga
DBGET
integrated database retrieval system
