Panicum virgatum (switchgrass): 120696486
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Entry
120696486 CDS
T07260
Name
(RefSeq) nuclear pore complex protein NUP98A-like
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120696486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120696486
03036 Chromosome and associated proteins [BR:
pvir03036
]
120696486
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120696486
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120696486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
120696486
NCBI-ProteinID:
XP_039835345
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All DBs
Position
3K:30765..36593
Genome browser
AA seq
918 aa
AA seq
DB search
MFGSTNPFGQSSASPFGQNSFGTQQGFGQATPAANNPFAPKPFGSPTTTFGAQTGSSLFG
TTSTGAFGQQQSTPTFGTTSTASFGQQQSTPAFGTPSSSPFGSSPAFSASPTPAFGATSS
TFGSGSLFGQKPSFGGFGSSPSQSSPFGGTFQQTQPTFGSSTFGASTTPAFGTTTTPAFG
ATTPAFGTTTTPAFGATTTPAFGSTSPSLFGASSTPAFGSSAPGFGTSAATAFGVSSSTT
GFGSSSTPSFGTSTNAFSFGPSPSFGQTAVASGSSPFGTTSPFGVQTPAFGSQTAAPTFG
QAQFGNQAGGTRIKPYAQTPDVDGATSGTQPAKLDSISAMPEYKDKSHEELRWEDYQRGD
KGGPNPSGTPTVTPTFPSSTPNTFTANSAFSQSTPNPFSSNNPFAKNVSTSASLFNTSFN
NTSVASSSPFTASTSTTMFGQTGVSAFPASSSPSLFPNAAPFASSSLFGTSTPNNSSLFG
TGLSLANTQSAPLFQSSPAFTQQPSSTPAFSSGNLFSTPNTSSLFGSGPSLFTTPTFPQS
APAQTSSMFSFQPPPQPASTVGFPGFSNMTNQALIGQQTPSQSNMVMQPAPVSNPFGTLP
AMPQMSIGNGGSSPLVQYGISSLPVAEKPLPSRTLSVAVPRHLLQRRFKLLPRKYNPISD
GKVPFFADDAESPATPKADAFFIPRENPRNLIIRPLEQWPSRSGINRQSVPKDSAGLDKY
EDASTESVRDKAVKSPSSSPLVENGKQHEPSHHGNGNDTSVEGLLPKLPQADYFMEPSLE
ELAAKERGEPGYCGQVEDFVVGRHGYGSIKFLGETDVRGLDLESIVEFNYREVIVYKDDS
KKPPVGEGLNKAAEVTLLNIKCVNKKTGDEYLDGPRVDRYRQMLMKKAEEQGAEFVSFDV
AKGEWKFRVEHFSAYGLW
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgttcggctccaccaacccatttgggcagtcatcagccagcccatttggccagaactca
ttcggaacccagcagggatttggccaggctacccctgctgctaacaacccctttgcgcca
aaaccgtttggcagcccgaccacaacttttggggcacagactggaagctcacttttcggc
actacatccactggtgcctttggccagcagcagtccactcccacatttggcactacatcc
actgcttcttttggccagcagcaatccactcccgcatttggcaccccgtcctcctctccg
ttcgggagctctccagctttcagtgcatcgcccactcctgcctttggtgctacatcctct
acctttggctctggatctttatttggacaaaagccaagttttggaggttttggatcatct
cctagccagtcaagtccttttggtggcacgttccagcaaacacaaccgacatttggcagc
agcacttttggtgcatcaactacaccggcattcggtaccacaactacgccggcatttggt
gcaactacaccagcctttggcaccacaactacaccggccttcggcgccacgactacccca
gcatttggttcaacatcaccatctttatttggtgcttctagcaccccggcgtttggctca
tctgctcctggttttggaacttcagcggccacagcatttggtgtgagtagtagtactaca
ggttttggatcttccagcacaccgtcatttggcacatcaaccaatgcattcagttttggt
ccttcaccatcgtttggacaaacagcagttgcctctggtagttccccctttggaacaaca
tcaccttttggtgtgcagactccagcatttggctcacagacagcagcaccaacttttggg
caggcacaatttggtaatcaagctggagggactagaataaaaccttatgctcaaacacca
gatgttgacggtgctaccagtggtactcagccagcaaaacttgattccatatcagcgatg
cctgaatacaaagacaagagtcatgaagaattgaggtgggaagattaccagcgcggagac
aagggtggaccaaacccttctggaactccaacagtgacgcctacctttccatcatcaaca
ccgaatacttttacagcaaacagtgcatttagccaatctactccaaacccattttcatca
aacaatccatttgctaagaatgtttcaactagtgcatcactattcaacacctcatttaac
aatacatcagttgcaagttcgagcccattcacagcatccactagtaccacaatgtttgga
caaacaggtgtttctgcatttccagcaagtagttcaccatctttgtttccaaatgctgct
ccttttgcttcgtcttcattatttggcacatcaacaccaaataattcaagtctattcggc
actggcttgtcgttggctaacactcaatcagctccactatttcaatcttcccctgcattt
acacaacagccatcaagtacaccagctttctcctctggaaacctatttagcacacctaat
actagcagtctgtttggcagtggaccttcactttttacaacgccaacatttccacaatct
gcccctgctcaaacttcaagcatgttctccttccaacctccgcctcaaccagcttctact
gttggatttcctggtttttccaacatgactaatcaggccctcattggacagcaaactcct
agccaatccaatatggtcatgcaacctgctcctgtctcgaatccatttgggacacttcca
gcaatgcctcagatgtccattgggaatggcggatcttctcctttggttcaatatggaata
tcgagtttgccggttgctgagaagcctcttccgagtagaacattgtccgtggcagttcct
aggcatttattacagagaaggttcaaattgctgccaagaaaatataatccaatatcagat
ggcaaagttccattctttgctgatgatgctgaatctcctgcaacaccaaaagcggatgct
tttttcatccctagagagaacccgaggaatctgataatccgtccactcgagcagtggccc
tcgcggagtggaattaacaggcaatcagttccaaaggattcagctggtttggacaaatat
gaagatgcatccactgaaagtgtgcgtgataaggctgtcaagtcaccaagtagcagtcct
ctggtggaaaatggcaagcagcatgagcccagtcatcatggaaatgggaatgacacttca
gttgaggggctgttgcctaagctccctcaggcagattacttcatggagcctagtctggag
gagcttgctgccaaagaacgtggtgagccaggctactgcggtcaggtggaggactttgtt
gtggggcgccatggctatggcagcatcaagttccttggggagacggatgtgcggggcctg
gatctggagtcaatcgtggagttcaattacagggaggttattgtgtacaaggacgacagc
aagaagcccccggtgggtgaggggcttaacaaggctgcggaggttactctcctgaacatc
aagtgcgtgaacaagaagacaggggatgagtacctagatggcccgcgggtggacaggtac
aggcagatgcttatgaagaaggcggaggagcagggcgcggagttcgtgtcctttgacgtg
gccaagggagagtggaagttcagggtggagcacttcagcgcctatgggctctggtga
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