Panicum virgatum (switchgrass): 120696575
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Entry
120696575 CDS
T07260
Name
(RefSeq) protein SCARECROW-like
KO
K27742
protein SCARECROW
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120696575
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Other transcription factors
GRAS
120696575
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Gene cluster
GFIT
Motif
Pfam:
GRAS
PEX14-like_2nd
RraB
Motif
Other DBs
NCBI-GeneID:
120696575
NCBI-ProteinID:
XP_039835467
LinkDB
All DBs
Position
3K:889523..892775
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AA seq
666 aa
AA seq
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MGSSSLLLFPSSSSAAPPPTASAAYSHATSSHSLLPPLPSSQDHLLLHYLHLAEHHQESA
AAAMVRKRPAPDMDLPPPRRHVTGDLSDVTAAAAGAGGQLPHQSPASAQLPALPTQLQLP
AYQQQQQHAEVEAPPAAAGEVAASTTAWVDGIIRDIIGSSGSAGVSIAQLIHNVREIIHP
CNPGLASLLELRLRSLLNADPAPPPLPHPPALLHSTPPAAAPAVPALPPPHPLPDKRRHD
PQQQEEPNPSPQSPKPPTAEETAAAAAAAAAAAAAAAKERKEEQRRKQRDEEGLHLLTLL
LQCAESVNADNLDDAHQTLLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLP
PASPAAARLHGRVAAAFQVFNGISPLVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQ
WPGLFHILASRPGGPPRVRLTGLGASLDALQATGKRLSDFADTLGLPFEFCAVAEKAGNV
DPDKLLGGVARREAVAVHWLHHSLYDVTGNDSNTLWLIQRLAPKVVTMVEQDLSHSGSFL
ARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVKFGSW
REKLAQSGFRSASLAGSAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWRP
IQTPCR
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgggctcctcctcgctgctcctcttcccctcgtcctcctccgccgcgccaccgcccacg
gcttctgctgcatattctcatgccacctcctcccactccttattgccgccgctcccctcc
tcccaagaccatttgctcctccactaccttcacctagcagagcaccaccaagaatccgcc
gccgccgccatggtccgcaagcgcccggcgcccgacatggacctccccccgccgcgccgc
cacgtcacgggcgacctctccgacgtcaccgccgccgccgctggtgccggcgggcagctg
ccgcatcagtcgcccgccagcgcgcagctgcccgcgctgcccacccagctccagctcccc
gcgtaccagcagcagcagcagcacgcggaggtggaggcgcccccggctgcggcgggcgag
gtggcggcgtccaccacggcgtgggtggacggcatcatccgcgacatcatcggcagcagc
ggcagcgccggggtctccatcgcgcagctcatccacaacgtccgcgagatcatccacccc
tgcaaccccggcctggcctccctcctcgagctccgcctccgctccctcctcaacgccgac
cccgccccgccgccgctcccgcatcctcctgctctcctgcacagcaccccgcccgccgcc
gccccagcagtgcccgctctccctccccctcatccgcttccagacaagcgccgccacgac
ccgcagcagcaggaggagcccaacccgtcgccgcagtcgcccaagcccccgaccgcggag
gagaccgccgcggcagccgcggccgccgccgccgcggctgccgcggccgccaaggagcgc
aaggaagagcagcggcggaagcagcgcgacgaggagggcctccacctgctgacgctgctg
ctgcagtgcgccgagtcggtgaacgccgataacctcgacgacgcgcaccagacgctgctg
gagatcgccgagctcgccacgcccttcggcacctccacccagcgcgtcgccgcctacttc
gccgaggccatgtccgcgcgcctcgtcagctcctgcctcggtctgtacgcgccgctgccg
ccggcgtcccccgcggcggcgcggctgcacgggcgcgtcgccgccgcgttccaggtgttc
aacggcataagcccgctcgtcaagttctcgcacttcacggcgaaccaggccatccaggag
gcgttcgagcgggaggagcgcgtccacatcatcgacctcgacatcatgcaggggctgcag
tggccgggcctcttccacatcctcgcctcccgccccggcggcccgcccagggtcaggctc
accggcctcggcgcttccctggacgcgctccaggccaccggcaagcgcctctccgacttc
gccgacacgctcggcctgccattcgagttctgcgccgtcgcggagaaggccggcaatgtc
gacccggacaagctgctcggcggcgtcgcgcggcgcgaggccgtcgccgtccactggctc
caccactcgctctacgacgtcaccggcaacgactccaacacgctctggctcatccaaagg
ctggcccccaaggtggtgaccatggtggagcaggacctcagccactcgggctccttcctg
gcgcgcttcgtggaggccatccactactactcggcgctcttcgactcgctggacgcgagc
tacggcgaggacagcccggagcggcacgtcgtggagcagcagctcctgtcccgggagatc
cgcaacgtgctcgccgtcggcggcccggcgcgcaccggcgacgtcaagttcgggagctgg
cgcgagaagctcgcacagtcggggttccgctcggcgtcgctcgccggcagcgcggcggcg
caggcgtcgctgctgctcggcatgttcccctccgatgggtacacgctcgtcgaggagaat
ggtgctctcaagctcgggtggaaggatctttgcctgctcactgcatctgcctggcgccca
attcagaccccatgccgttaa
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