KEGG   Panicum virgatum (switchgrass): 120696620
Entry
120696620         CDS       T07260                                 
Name
(RefSeq) aladin-like isoform X1
  KO
K14320  aladin
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    120696620
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120696620
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     120696620
SSDB
Motif
Pfam: ANAPC4_WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_CAF1B_HIR1 Beta-prop_IFT140_1st WD40 Beta-prop_EML_2 WD40_Prp19 eIF2A Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_1st Beta-prop_HPS5
Other DBs
NCBI-GeneID: 120696620
NCBI-ProteinID: XP_039835515
LinkDB
Position
3K:complement(1251023..1255867)
AA seq 442 aa
MPIFPPPGAVTVCEINRDLVVAEALSDDRAKDAYGDVLGMVFSPMPFQPYTLPPIRDPPA
AEQPESTENVPTASVTSTISEFFKRMIFPPLNPNQLQEFDIQKISWNPHKHCLAFVSGKN
QVIVHDFEDSDAKEPFILTSDQQTNVKAVEWRPNSGKMIAVACKGGICLWSASYPGDVPF
MKAGVTPYSFSAFPRSSGGRWILVDVLRDSSAEQVTALCWKPDGRYLASASCNSPSFTIW
DVSQGLGTPIRRGLSNISLLRWSPSGDYLLAAKFDGTFHFWETNTWTSEPWSSSNGYVSG
ANWDPEGRVALVSFSNSTTLGSILFSSKPPSIDAHLLPVELPEISSLIVSRGIEKLAWDA
SGERLALSFKDGNEMYHGLVAVYDVRRSPLVSVSLVGFIRGPGEGAKPLAFAFHNKFKQG
PLLSVCWSSGWCCTYPLILRSH
NT seq 1329 nt   +upstreamnt  +downstreamnt
atgccgatcttccctccgcccggcgccgtcaccgtctgcgagatcaaccgcgacctcgtt
gtggcggaggcactgtccgacgaccgcgccaaggacgcgtacggcgatgtcctcggaatg
gtcttcagccctatgcctttccagccatacactcttcccccgatccgcgatccccctgct
gcagagcaaccagagtccactgagaacgtgcccacagctagtgtgacttccaccatatcc
gagttcttcaaacggatgatcttccctccattaaatccaaatcagctacaagaatttgac
atccagaaaataagttggaatccgcacaagcattgtctagcatttgtgtctgggaagaac
caggttattgtacatgactttgaggattcagatgctaaagagccgttcattttgacaagc
gaccagcagaccaatgttaaggctgttgagtggagaccaaatagtggcaagatgattgca
gtcgcctgcaagggagggatatgcctctggtcagcatcatatcctggcgatgttccattc
atgaaagctggggtcaccccttattcctttagtgccttccctagaagttctggtggtcgg
tggatactggtggatgttcttcgtgactcttctgctgagcaagttaccgcgctttgttgg
aaacctgatggaagatacttggcatctgcctcctgtaatagtccatctttcacgatttgg
gatgtgtctcaagggttgggtactcctatacggcgtggattaagtaatatatcactactg
cggtggtcacctagtggagattatcttctagctgctaaatttgatggaacttttcacttc
tgggagacaaacacatggacttcagaaccttggtcttcatctaacggatatgtgtctgga
gcgaattgggacccagaaggtcgtgttgcattggtatccttttctaactccacaacactt
ggctcaattctcttctcatctaagccaccatctatagatgctcatctcctaccagttgaa
ctcccagaaatttcctccctgattgtcagccgaggcatagaaaaattagcatgggatgct
tcaggggagcgtttggcattgtcgttcaaagatggaaatgaaatgtaccatggtcttgtt
gcagtatatgacgtgaggagatctccacttgtctcagtatcactagttggattcattaga
ggacctggagaaggagcgaaaccacttgcttttgctttccataataaatttaagcaagga
cccttgctttctgtgtgctggagcagtggctggtgctgtacatatccacttatacttcgt
tcccattaa

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