Panicum virgatum (switchgrass): 120696620
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Entry
120696620 CDS
T07260
Name
(RefSeq) aladin-like isoform X1
KO
K14320
aladin
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120696620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120696620
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120696620
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ANAPC4_WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
WD40
Beta-prop_EML_2
WD40_Prp19
eIF2A
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
120696620
NCBI-ProteinID:
XP_039835515
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Position
3K:complement(1251023..1255867)
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AA seq
442 aa
AA seq
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MPIFPPPGAVTVCEINRDLVVAEALSDDRAKDAYGDVLGMVFSPMPFQPYTLPPIRDPPA
AEQPESTENVPTASVTSTISEFFKRMIFPPLNPNQLQEFDIQKISWNPHKHCLAFVSGKN
QVIVHDFEDSDAKEPFILTSDQQTNVKAVEWRPNSGKMIAVACKGGICLWSASYPGDVPF
MKAGVTPYSFSAFPRSSGGRWILVDVLRDSSAEQVTALCWKPDGRYLASASCNSPSFTIW
DVSQGLGTPIRRGLSNISLLRWSPSGDYLLAAKFDGTFHFWETNTWTSEPWSSSNGYVSG
ANWDPEGRVALVSFSNSTTLGSILFSSKPPSIDAHLLPVELPEISSLIVSRGIEKLAWDA
SGERLALSFKDGNEMYHGLVAVYDVRRSPLVSVSLVGFIRGPGEGAKPLAFAFHNKFKQG
PLLSVCWSSGWCCTYPLILRSH
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgccgatcttccctccgcccggcgccgtcaccgtctgcgagatcaaccgcgacctcgtt
gtggcggaggcactgtccgacgaccgcgccaaggacgcgtacggcgatgtcctcggaatg
gtcttcagccctatgcctttccagccatacactcttcccccgatccgcgatccccctgct
gcagagcaaccagagtccactgagaacgtgcccacagctagtgtgacttccaccatatcc
gagttcttcaaacggatgatcttccctccattaaatccaaatcagctacaagaatttgac
atccagaaaataagttggaatccgcacaagcattgtctagcatttgtgtctgggaagaac
caggttattgtacatgactttgaggattcagatgctaaagagccgttcattttgacaagc
gaccagcagaccaatgttaaggctgttgagtggagaccaaatagtggcaagatgattgca
gtcgcctgcaagggagggatatgcctctggtcagcatcatatcctggcgatgttccattc
atgaaagctggggtcaccccttattcctttagtgccttccctagaagttctggtggtcgg
tggatactggtggatgttcttcgtgactcttctgctgagcaagttaccgcgctttgttgg
aaacctgatggaagatacttggcatctgcctcctgtaatagtccatctttcacgatttgg
gatgtgtctcaagggttgggtactcctatacggcgtggattaagtaatatatcactactg
cggtggtcacctagtggagattatcttctagctgctaaatttgatggaacttttcacttc
tgggagacaaacacatggacttcagaaccttggtcttcatctaacggatatgtgtctgga
gcgaattgggacccagaaggtcgtgttgcattggtatccttttctaactccacaacactt
ggctcaattctcttctcatctaagccaccatctatagatgctcatctcctaccagttgaa
ctcccagaaatttcctccctgattgtcagccgaggcatagaaaaattagcatgggatgct
tcaggggagcgtttggcattgtcgttcaaagatggaaatgaaatgtaccatggtcttgtt
gcagtatatgacgtgaggagatctccacttgtctcagtatcactagttggattcattaga
ggacctggagaaggagcgaaaccacttgcttttgctttccataataaatttaagcaagga
cccttgctttctgtgtgctggagcagtggctggtgctgtacatatccacttatacttcgt
tcccattaa
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