Panicum virgatum (switchgrass): 120696687
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Entry
120696687 CDS
T07260
Name
(RefSeq) long chain acyl-CoA synthetase 6, peroxisomal-like isoform X1
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00061
Fatty acid biosynthesis
pvir00071
Fatty acid degradation
pvir01100
Metabolic pathways
pvir01212
Fatty acid metabolism
pvir04146
Peroxisome
Module
pvir_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
120696687
00071 Fatty acid degradation
120696687
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
120696687
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pvir01004
]
120696687
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120696687
Enzymes [BR:
pvir01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
120696687
Lipid biosynthesis proteins [BR:
pvir01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
120696687
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of breast milk
120696687
Exosomal proteins of breast cancer cells
120696687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
DUF3572
Apo-VLDL-II
Motif
Other DBs
NCBI-GeneID:
120696687
NCBI-ProteinID:
XP_039835599
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All DBs
Position
3K:complement(1838983..1847443)
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AA seq
704 aa
AA seq
DB search
MAPQQDQEQPPMDAARRRIRAVSAHLSPPAPAAGSGLDANPTAGEYAHVQGYSVVLPEKL
QTGKWNVYRSARSPLRLINRFPENPDIGTLHDNFVYAVEMFRDCRYLGTRIREDGTVGDY
KWMTYGEASTSRTAIGSGLIHCGILEGARIGLYFINRPEWIIVDHACAAYSYVSVPLYDT
LGPDAVQFIVNHATIEVIFCVPQTLSTLLSFITHMPCVRLIVVVGGEDVKIPLTPANTGV
QTITYTTLHNQGKTSPQPFRPPKPDGVATICYTSGTTGTPKGAVLSHENLIANVAGSSLG
IKFYPSDVYISYLPLAHIYERANQVALLHYGVAIGFYQGDNLKLMDDLAALRPTIFSSVP
RLYNRIYAAITNAVKESGGLKERLFHTAYNAKRQAILNGRNPSPMWDRLVFNKIKARLGG
RVRLMSSGASPLSSDVMEFLRICFGGEIFEGYGMTETSCVISTMDIGDKLIGHVGSPNPA
CEVKLVDVPEMNYTSEDQPYPRGEICARGPIIFRGYYKDEVQTREVIDEDGWLHTGDIGL
WLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFIAQCFVYGDSFNSSLVAIVAV
EPEVLKAWAASEGIQYEDLRQLCADPRARATVLADMDSIGKEAQLRGFEFAKAVTLVAEP
FTLENGLLTPTFKVKRPQAKAYFAKEISDMYAQLREAESAKAKL
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgcagcaggatcaggagcaacccccaatggacgccgcccggcgccgcatccgc
gcggtctccgcccacctcagcccgccggcgcccgccgcgggcagcggcctcgacgccaac
cccaccgccggcgagtacgcccatgtgcagggttacagtgtggttctccctgagaagttg
caaactggaaagtggaatgtgtacagatctgcacggtcacctcttaggttgataaatagg
tttcctgaaaatccagatatcggaacgctgcatgataattttgtgtatgcagttgagatg
tttagggattgtcgatacctgggaacaagaatccgcgaagacggaactgttggagattac
aaatggatgacatatggggaagcaagtacaagcaggactgcaataggttctggtctcatt
cactgtggaatacttgaaggtgcacgcattggtctgtattttataaacagacctgaatgg
atcatagttgatcatgcttgtgctgcatactcatatgtatctgtgccactttatgacacc
cttggtccagatgcagttcaattcattgtgaaccatgcaacaatagaagttattttctgt
gtgcctcaaacactaagcactctgttaagctttataacccacatgccatgtgttcggctt
atagtggtagttggtggagaagatgttaagattccactcacacctgcaaatactggagtg
caaactataacttacaccactctacacaatcagggaaagacgagccctcaacctttccga
cctccaaaacctgatggcgttgctactatttgttacacaagtggtaccacaggtactcca
aagggagctgttctttctcatgagaacttaatcgcaaatgtagcagggtcaagcctggga
attaaattttacccctctgatgtctatatttcttatttacccttggctcacatctacgag
agagctaaccaggttgcgttgcttcactatggtgttgccattggattttaccaaggggat
aatttgaagctgatggatgatctggctgctttgagaccaacaatattctcaagtgttcct
cggttatataacagaatttatgcagcaattacaaatgctgtgaaggaatctggtgggctg
aaagaaagactgtttcatactgcatacaatgccaagaggcaagcaattcttaatggacga
aatccgtcgccaatgtgggataggttggtgtttaacaaaataaaagctaggcttggtgga
cgagtgagactcatgtcttcaggtgcttctccattgtcatcagatgtcatggaattctta
aggatatgctttggtggtgaaatttttgaaggctatggaatgacagagacatcttgtgtc
atctctacaatggatattggcgataagttaattggtcatgttggatccccaaaccctgct
tgcgaggttaaacttgtggatgtcccagaaatgaattatacttctgaggatcaaccatat
cctcgtggagaaatctgtgctaggggacccataattttccgtggctattataaagatgaa
gttcaaacaagagaggtcattgatgaagatggttggttacacaccggagacataggttta
tggctgcctggagggcgtttaaaaattatagataggaaaaagaacattttcaaattagct
caaggagagtacatagctccagagaagatcgagaatgtctatgccaagtgcaagttcatt
gctcaatgctttgtatatggtgatagtttcaactcttccctagttgccattgtagcagtt
gaacctgaggtgttgaaggcttgggctgcatcagaaggaattcagtacgaggacttacga
cagctctgtgctgatcctagagcaagagccactgtcctggctgacatggattccattgga
aaggaagctcagctaagaggttttgaatttgcaaaagctgttacccttgttgctgaacca
ttcacattggaaaatggtctcctcaccccaacgttcaaggtcaaaagaccgcaagctaag
gcatactttgcaaaagaaatctcagatatgtacgctcaattgcgagaggcagagtcagct
aaggcgaagctatag
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