Panicum virgatum (switchgrass): 120696689
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Entry
120696689 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase ATL42-like isoform X1
KO
K22378
E3 ubiquitin-protein ligase RNF181 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120696689
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120696689
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120696689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-RING_5
zf-ANAPC11
zf-C3HC4_3
zf-RING_16
zf-RING_4
DUF1272
zf_RING_Vps8_fungal
Rad50_zn_hook
Prok-RING_4
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
120696689
NCBI-ProteinID:
XP_039835603
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All DBs
Position
3K:complement(1853345..1854895)
Genome browser
AA seq
229 aa
AA seq
DB search
MSSPISGRRRSRDDSLLQMDAAASAPPPPAAASDGRVATHRPPLFHARTSSLHVTRVERR
PYEADAERHSRVIDAILIYDIQSSRSRSPSRNRARLAASSDAVLGLQEVGSGAGTPAAEE
CAVCLQDFVAEDKLRAMPCSHTFHQDCIFRWLEVNHVCPLCRHELPTQEEEEEDDEEDER
GYQEDVIYQIYREMYSEETYLRYFSAEYLDPYFGTENNQQESMPVTEAA
NT seq
690 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctccgatcagtggccgccgccggagccgcgacgacagcctgctgcagatggac
gccgccgcaagcgcaccaccgccacctgctgccgcttctgacgggcgggtggccacccac
cgtccgccgctcttccatgcccggacgtcctcgctccacgtgactcgcgtcgagcggcgg
ccgtacgaggccgacgccgagaggcactcccgcgtgattgacgctatcctgatctacgac
attcaatccagccgcagccgcagcccaagccgcaatcgtgctcgactcgccgcctccagc
gacgccgtcctgggcctgcaggaggtcgggtccggcgcggggacgccggcagcggaggag
tgcgccgtgtgcctgcaggacttcgtggcggaggacaagctcagggcgatgccctgctcc
cacactttccaccaggactgcatcttccgctggctcgaggtcaaccatgtctgcccgctc
tgtcgccacgagctgcccacgcaggaggaggaggaggaggacgacgaagaagatgagaga
ggttaccaggaggatgtgatttaccaaatttatcgggagatgtattcggaagaaacttat
cttcgctactttagtgccgaatatcttgacccgtattttggcaccgagaataatcagcag
gagagcatgccggtgacggaggcggcctag
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