Panicum virgatum (switchgrass): 120696856
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Entry
120696856 CDS
T07260
Name
(RefSeq) SWI/SNF complex subunit SWI3C-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120696856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120696856
03036 Chromosome and associated proteins [BR:
pvir03036
]
120696856
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120696856
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120696856
PBAF complex
120696856
GBAF(ncBAF) complex
120696856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
Motif
Other DBs
NCBI-GeneID:
120696856
NCBI-ProteinID:
XP_039835805
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All DBs
Position
3K:3647265..3653872
Genome browser
AA seq
775 aa
AA seq
DB search
MPRKASSTSDARAKWRKRKRAAASPSPSKQQADHSDDSDSAAAANGDEDVPRGASANGGV
GTLAAGGGGDDDPVLDLRGAEVLSSPAEPVSSFPVAVRRAVGRPHPSVLAIVDAERAAAG
ADGALAAPASVPVLENISHGQLQVISAMLPDHPSLSHDPDKPSTYVCTPPPLMEGCGVHK
QFYGKLHIVPRHSDWFVPTTVHRLERQVVPQYFSGKSQGQTPEKYMMLRNKVIAKYLERP
QKRLVFAECQGLVTSTPELYDLSRIVRFLESWGIINYLATGSVHRGLRMAASLIKEETTG
ELQLVSAPMKSIDGLVLFDRPKCSVRADDIASAVSTSSASAVANGDTDSANLDEKIWERL
SEASCSFCLQPLPSLHYESQKEADFALCSDCFHNARFVTGHSSLDFQIVDGMKDRSDTDG
DRWTDQETLLLLEGIEKFNDNWNHIAGHVRTKSKAQCIQHFIRLPVEDGLLENIEVPEAS
LPSRMQSNGFLHSDSNGSTSGCSRQSSQSGNQIPFINSANPVMSLVAFLASEVGPRVAAA
CASAALSVLTIDDSMMCSEGINAMGHSAHQNYGLSSSISPETVKHAAICGLSAAATKSKL
FADQEEREIQRLAATIINHQLKRLELKLKQFAEVETLLLKESERIELMRQQLAAQRVRIL
STRLPSAGGTLPGGGSTMSSNPMNQATSVRPQMMQVSMPQSSMPAMYANNMQGHPQMAAL
LQQRQQMLSFGPRLPLSAIHPGTSSSSAPSMMFNPGMPNSAALLRPPSGNNSNVG
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcaaggcctcctccacctcagatgcgcgggccaagtggcggaagcggaagcgc
gccgccgccagcccatccccgtccaagcagcaggccgaccactctgacgattccgactcc
gccgcagcggcgaacggcgatgaggacgtgccccgcggcgcctctgccaacgggggcgtc
ggaaccctagctgccggcggcggcggcgatgacgaccccgtgctcgacctccgcggggcg
gaggtgctttcctctccggccgagccagtctcctccttccccgtggccgtccgccgcgcc
gtcggccggccgcacccctcggtacttgctatcgtcgacgcggagcgcgcggcggccggt
gccgacggtgctctggccgccccagcctcggtacccgttctcgagaacatttcgcacggt
cagctccaggtgatctcggcgatgctgcccgaccacccgtccctgtcacacgaccctgac
aagccgtccacgtatgtctgcaccccacctccactcatggagggatgtggagtgcacaag
cagttctacggcaaacttcacatcgtgcccaggcactcagattggttcgtgccaacaacg
gtgcacagattggagaggcaggttgtgccacagtacttctctggaaaatcccaggggcaa
acaccagagaagtatatgatgttgaggaataaggtgattgcaaagtatttggagcgtcct
cagaaaagacttgtgtttgctgagtgccaggggcttgtcacaagcacacctgaattgtat
gacctgagtaggatagttaggttcctggaatcttgggggatcattaattaccttgcaaca
gggtctgtgcaccgtggcctcaggatggcagcatcactaatcaaggaggagacaacaggg
gagctgcaactggtatctgcacctatgaaatcgattgatggtttggttttgtttgatcgg
ccaaaatgcagtgtccgggcagatgatatagcttctgcggtgtcaacttcatctgcttcc
gcggtggcaaatggtgataccgattctgctaatttggacgagaagatctgggagcgctta
tcagaggcttcttgtagtttctgcttacagcctttgcctagtttacattacgagtcacaa
aaggaggcagactttgctctttgttcagattgcttccacaatgcaagatttgttactggg
cattcaagcttagattttcagatagtggatgggatgaaggaccgatcagacactgatggg
gacagatggactgatcaggaaactttactgttgttggagggcattgagaagttcaatgat
aactggaatcatattgctgggcatgtcagaacaaagtcaaaggcacaatgtattcaacat
tttattcgtctcccagtggaagatggtttgttggagaacattgaagtgccagaagcatcc
ctaccatccagaatgcaaagcaatggttttttgcattcagattccaatggcagtacttca
ggttgttcacgtcaaagtagccaatctggaaaccagattccattcattaattctgctaat
ccggtcatgtcactggttgcatttttggcctctgaagtaggaccaagggttgccgcagcc
tgtgcgagtgcagcattatcagttttgacaatagatgattccatgatgtgttcagaaggc
atcaatgccatgggtcattctgcccatcaaaattatggactctcgtcatccatctctcct
gaaactgtcaaacatgctgccatttgtggcttgtcagcagccgcaacaaagtccaaactt
tttgcagatcaggaagagcgtgaaattcagagattagctgcaaccatcataaatcatcag
ttaaagagactggagttgaagttgaagcagtttgcggaggtcgagaccttgctcttgaag
gaaagtgaacggattgagctgatgaggcagcagctggcagctcagcgtgtccgaatatta
tcaacccggttaccctccgcaggtggcactctaccaggaggtggcagtaccatgtcttca
aatccaatgaatcaggccaccagcgttagaccgcagatgatgcaggtctcgatgccgcag
tccagcatgccggcgatgtatgccaacaacatgcaggggcatccccagatggctgctctg
ctgcaacagcggcaacagatgctctcgtttgggcctcgcctgccgctgtcagcaatccac
cctggcacatcatcctcatcggcgcccagtatgatgttcaaccctggtatgcccaactcg
gctgcgctgctgagaccaccctcagggaacaattcaaatgtaggttaa
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