Panicum virgatum (switchgrass): 120696867
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Entry
120696867 CDS
T07260
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00040
Pentose and glucuronate interconversions
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
120696867
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
120696867
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
120696867
NCBI-ProteinID:
XP_039835825
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Position
3K:complement(3718918..3720646)
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AA seq
364 aa
AA seq
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MDPPPPPPPLQQQQQQPPHPRNPRGEGHGGVEMPYQDADHRLRALAGRAEGFGRPAIGGL
HGAVYHVTSLQDDGPGSLREACRAAEPLWIVFEVSGTIRLHSYLRVSSHKTIDGRGQRVV
LTGKGLQLKTCHHVIVCNLVFEGGRGHDVDGIQIKPGSTNIWIDRCTLADYDDGLIDITR
QSTDITVSRCHFARHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRHPRLRFGKVHLY
NNYTRSWGIYAVCASVEAQLVSQCNIYEAGGGPPKKTTVFKYMPEKAGDREDTVAGSIRS
EGDAFLNGALPCLVGGPGGAAHEAVYRPEDYYQHWTMEPASPALKDIIQLCAGWQPVPRP
PDDC
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atggatccccctcctcctcctcctcctttgcagcagcagcagcagcagcctccgcaccct
cgcaatcctcgcggtgagggtcacggcggcgtggagatgccgtaccaggacgcggaccac
cggctccgcgcgctcgccggccgcgccgagggcttcggccgccccgccatcggcggcctc
cacggggccgtctaccacgtcacgtccctccaagacgacggccccgggagcctgagggag
gcgtgccgcgcggcggagcccctgtggatagtcttcgaggtgtccggcaccatccgcctc
cactcctacctccgcgtctcctcccacaagaccatcgacggccgcggccagcgcgtggtg
ctcaccggcaaggggctccagctcaagacctgccaccacgtcatcgtctgcaacctggtg
ttcgagggaggccggggccacgacgtcgacggcatccagatcaagcccggatccaccaac
atctggatcgaccgatgcactctcgccgactacgacgacgggctcatcgacatcacgcgc
cagagcacggacatcacggtctcaaggtgccactttgcccggcacgacaagacgatgctt
atcggcgctgaccccacgcacgtcggcgaccgctgcatcagggtcaccatccaccactgc
ttcttcgacggcacgcggcagcggcacccacgcctccgcttcggcaaggtccacctctac
aacaactacacgcgcagctggggcatctacgccgtctgcgccagcgtcgaggctcagcta
gtgtcccagtgcaacatctacgaggcaggcggagggcccccgaagaagaccaccgtgttc
aagtacatgccggagaaggccggcgaccgagaggatacggtggccgggtccatcaggtcg
gaaggggacgctttcctcaatggggcgctgccctgcctggtcggtggccccggtggggct
gcacacgaagctgtctacagaccagaggattactaccagcattggaccatggagccagcg
tcgccggcgctcaaggacatcatacagctctgtgccggatggcagccggtgccaaggcct
cctgatgattgctag
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