Panicum virgatum (switchgrass): 120696889
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Entry
120696889 CDS
T07260
Name
(RefSeq) RNA-binding NOB1-like protein
KO
K11883
RNA-binding protein NOB1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120696889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120696889
03051 Proteasome [BR:
pvir03051
]
120696889
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
120696889
Proteasome [BR:
pvir03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
120696889
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIN_6
Zn_ribbon_NOB1
Motif
Other DBs
NCBI-GeneID:
120696889
NCBI-ProteinID:
XP_039835885
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Position
1K:1157029..1160243
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AA seq
580 aa
AA seq
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MEAWPPLAPAVPASDDAAVPPPPPPAAGAWGAAATAQRKAVVQESAAQAVSRLVASCANS
SGVAVAVVDANAVIAGGSALSTTAGRLVTVPEVLEEVRDAAARRRLALLPVPVETVEPAP
EFVKRVTKFARETGDIQTLSDVDIKIIALAYMLEAEIHGTSHLREHPPPLREVNVRKLSE
APLPGWGSNVPNLKEWEELDQVSEAGGDINSRILPLKDLENQDIPMSETNSVCEAQEDAE
HQPNKDARTAWEDDENNEGWTPAVSRSTHRRYLRRKARRDALKESGQSLETSSVAPSIDA
DKVLSENGGSEYDLTPTDGPSSAPEQVNSSTDGLECQVENEHEIAGEHIHSDQLANDDDT
DECTKELDNLDIKSESDGGDDAHSVDDESSEQSWALRSLSESTVACVTSDYAMQNVILQI
GLRLLAPGGMQIRQMHRWVLRCHACYKVTQEVGKIFCPKCGNGGTLRKVSVTVGENGITM
ASRRPRVTLRGTKFSLPMPQGGRDAITKNPILREDQLPQKVLHPKSKKSSKQEDDFLGID
DIFSHSGDKKAPLKPPVRKALAMFSGKRNPNDNHFSRKKH
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggaagcgtggccgcctctcgcccccgcggtccctgcttccgacgatgcggccgtccct
ccgcctccccctcccgccgccggggcgtggggggccgcggccaccgcgcagcggaaggcc
gtggtgcaggagtcggctgcgcaggcggtgagccggctcgtggcgagctgcgccaactcc
agcggcgtggccgtggccgtggtggacgctaacgccgtcatcgctggcggctccgcgctc
tccaccaccgccgggcgcctggtcactgtgccggaggtgctcgaggaggttcgcgacgcg
gccgcgcgccgccgcctggcgctcctccccgtccccgtcgagaccgttgagcctgcgccg
gagttcgtcaagcgagtcaccaaatttgccagggagacaggtgacatccaaacactttca
gatgttgatatcaagattattgctttggcttacatgttagaagccgagatccatgggact
agccatttgcgggagcaccctcctcctctgcgtgaggtgaatgtcagaaaactgtctgaa
gctccacttcctggttggggctctaatgtccctaatctgaaagaatgggaagagttggat
caggtgtctgaagcaggtggagatatcaattctcggatacttccactgaaggatcttgag
aatcaagatatccccatgagtgagaccaacagtgtttgtgaggcacaagaggatgcagaa
caccagcctaataaagatgcacgcactgcatgggaagatgatgagaataacgaaggttgg
acacctgctgttagccgcagcacacacagaagatatctgcggaggaaggcaaggcgtgac
gcccttaaggaatctggacaaagtcttgagacaagttctgttgctccatcaattgatgct
gataaggtcctctctgaaaatggtgggtctgagtatgatttgactccaacagatggccct
tcttctgcccctgagcaagtcaattcaagtactgacggattggaatgtcaagtagagaat
gaacatgaaattgccggagagcatatacattctgatcaactggccaatgatgatgatact
gatgaatgcactaaggaattggataacctcgacataaaaagcgagagtgatggaggtgat
gatgcgcattctgtggatgatgagagcagtgagcagagttgggccctgaggtccttatct
gagtctactgtagcatgtgttactagtgactatgccatgcaaaatgtcatcctgcagatt
ggcctccgtctcttggcaccaggtggcatgcagatacgccaaatgcatagatgggttttg
aggtgtcatgcttgctataaggtgacccaagaggttggcaaaatattttgtccaaagtgt
ggcaatgggggaactttacggaaggtttcagtaactgttggtgaaaatgggatcactatg
gcctcacgacgcccacgcgttacacttcgcggcacaaagttttccctcccaatgccccaa
ggtggaagagatgccataactaagaaccccattctacgagaagaccaacttcctcagaag
gttcttcatccaaaatcgaagaagtccagcaagcaggaggacgatttcttgggcatcgac
gacatattttcacacagcggtgacaagaaggcaccgttgaaacctccagtgaggaaggca
cttgcaatgttcagtgggaaaagaaatccaaacgacaaccatttttcccgcaagaagcac
taa
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