Panicum virgatum (switchgrass): 120696912
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Entry
120696912 CDS
T07260
Name
(RefSeq) high mobility group B protein 6-like
KO
K09273
upstream-binding transcription factor
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120696912
03021 Transcription machinery [BR:
pvir03021
]
120696912
Transcription factors [BR:
pvir03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
UBF
120696912
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
UBF
120696912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
CHDNT
KRAB
FAM124
Motif
Other DBs
NCBI-GeneID:
120696912
NCBI-ProteinID:
XP_039835896
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All DBs
Position
1K:complement(15330335..15332743)
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AA seq
482 aa
AA seq
DB search
MATVAAGIKRGGGRGRKALVAVLDNEANISAGDLSASSAQKSKRAPARSGKAGKAAAAAV
VDDVAELQGMLERLRLEKEKAEEMVRERDEVIRKKEEEIETKGKEQERLQAELRKVQRAK
EFKPTVSLPLVKSLLEKEQDGDDKGKKKKKGKGKAGPERKKPCPAYVLWIKDQWVEIKKE
NPEADFKEVSNTLGAKWKALGAEEKQPYEERYRQEKEAYLQVVGQEKREAEAMKLLEEQQ
MQWTAKELLEQYLKFRQEAEEGDGGKKGKRKNSKKDKDPSKPKQPMSAYFVYSQERRAAL
VAEKKNVPEIGKITGEEWKNMTEAQKAPYQEVANKQKEEYHKQMEVYNQKKTEEAASLEK
EEEEQKKIMKQEALELLKKKEKTVNIIKKTKEKRQMKKQENADPNRPKRPASSFILFSKE
ARKQLLEERSGINNSTLNALISVKWKELSGEERQMWNDKAAPAMAAYKKEMEEYTKAHSS
SA
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgtcgcggcagggatcaagaggggcggcggccggggccgcaaggcgctcgtg
gccgtgctcgacaacgaggccaacatctccgccggggacctctcggcttcctccgcgcag
aagtcgaagcgggcgccggccaggagcggcaaggccggaaaggccgcggcggcggccgtc
gtggacgacgtggcggagctgcaggggatgctggagcggctgcggctggagaaggagaag
gcggaggagatggtgcgggagcgggacgaggtcatccggaagaaggaggaggagatcgag
accaaggggaaggagcaggagcgcctccaggccgagctcaggaaggtgcagcgcgccaag
gagttcaagcccaccgtgagccttcctctcgtcaagtcgctgcttgagaaggagcaggac
ggagacgacaagggcaagaagaagaagaaggggaagggcaaggccggcccggagaggaag
aagccctgccctgcgtatgttctctggatcaaggaccaatgggtcgagatcaagaaggag
aacccggaggccgacttcaaggaggtgtccaacacgctgggcgccaagtggaaggcgctg
ggcgccgaggagaagcagccctacgaggagcggtaccggcaggagaaggaggcctacctg
caggtggtcggccaggagaagcgcgaggccgaggccatgaagctgctcgaggagcagcag
atgcagtggaccgccaaggagctgctggagcagtacctcaagttcaggcaggaggccgag
gagggcgatggcggcaagaaggggaagaggaagaacagcaagaaggacaaggacccctcc
aagcccaagcagcccatgtcggcctatttcgtgtactcgcaggagaggcgcgccgctctg
gtcgccgagaagaagaacgtgcctgagattggcaagatcaccggagaggagtggaagaac
atgacagaggctcagaaggctccctaccaggaagtcgccaataagcagaaggaggaatac
cacaagcagatggaggtgtacaaccagaagaagactgaggaagctgcgagcctggagaaa
gaagaggaggagcagaagaaaatcatgaagcaagaggctcttgagctgcttaagaaaaag
gagaagacagttaacatcattaagaaaaccaaagaaaagcgccaaatgaagaagcaggag
aacgctgatcccaacaggcccaagaggcctgcctcttccttcattcttttcagcaaggaa
gcgaggaagcagctgcttgaggagcgctctggcattaataactcgacactgaatgcgctc
atctcggtgaagtggaaggagctgagtggcgaggagcggcagatgtggaatgataaggcc
gcgcctgccatggcagcatacaagaaggagatggaggagtacaccaaggctcacagctcg
tctgcttga
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integrated database retrieval system
