Panicum virgatum (switchgrass): 120696914
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Entry
120696914 CDS
T07260
Name
(RefSeq) syntaxin-related protein KNOLLE-like
KO
K08486
syntaxin 1B/2/3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
120696914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120696914
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120696914
Membrane trafficking [BR:
pvir04131
]
SNARE
Syntaxin (Qa)
Stx-PM
120696914
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of epithelial cells
120696914
Exosomal proteins of other body fluids (saliva and urine)
120696914
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syntaxin
SNARE
CC149
Motif
Other DBs
NCBI-GeneID:
120696914
NCBI-ProteinID:
XP_039835899
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All DBs
Position
3K:complement(4142069..4143283)
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AA seq
302 aa
AA seq
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MNDLMTDSFVAAAAKAQHAGAPASSAGGGDPELRAFLAEADAAKAEMAALRDELSRLRTA
HEASRNAVAVGSGGGRAATQAALVQLLGSARRLRARLASMDRRAPGPAVQAAAGLRGRVR
DLTGDVQALRRQVSAERREDAARRYLAVAGDAPTEEQLDRLLANADDSDAAMRAALLSAP
AAVAEEQQEAAREVAEVERGLLELQHVFLDMAALVEAQGAPLDDIERHVAAAAGDVGAAE
AELREARRLQGEARRRRVFLASGLAALLLIAVAIAVVAALVLARRGGGRNLLLQIGSNLP
VR
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacctcatgaccgactccttcgtcgcagccgcggccaaggcgcagcatgccggc
gcgcctgcctcatccgccggcggcggcgacccggagctccgcgcgttcctggccgaggcg
gacgcggctaaggccgagatggccgcgctgcgggacgagctctcccggctgcggaccgcg
cacgaggcgtcccggaacgccgtcgccgtcggctccggcggcgggcgcgccgccacgcag
gccgcgctcgtccagctcctcggctccgcgcggcgcctccgggcgcgcctggcctccatg
gaccgccgcgcgcccggccccgccgtccaggccgcggcggggctccgcggccgcgtgcgc
gacctcaccggggacgtccaggccctccggcgccaggtctccgccgagcggcgcgaggac
gcggcccggcggtacctcgccgtcgccggggacgcgcccaccgaggagcagctggaccgc
ctccttgccaacgccgacgattccgacgcggcgatgcgggcggcgctgctgtccgccccg
gcggcggtggcggaggagcagcaggaggcggcgagggaggtggcggaggtggagcgcggc
ctcctggagctgcagcatgtgttcctggacatggcggcgctggtggaggcccagggcgcg
ccgctggacgacatcgagcggcacgtcgcggcggccgcgggcgacgtgggcgcggccgag
gcggagctgcgggaggcccggaggttgcagggcgaggcgcggcggaggcgggttttcctg
gccagcggcctcgcggcactgctgctcatcgccgtagccattgctgtcgtggcggcgctc
gtgctggcacgcaggggcggcggcaggaaccttctgctgcagatcggctcgaacttgccc
gtgcggtga
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