Panicum virgatum (switchgrass): 120696989
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Entry
120696989 CDS
T07260
Name
(RefSeq) chaperone protein ClpC2, chloroplastic-like
KO
K03696
ATP-dependent Clp protease ATP-binding subunit ClpC
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120696989
Chaperones and folding catalysts [BR:
pvir03110
]
Heat shock proteins
HSP100
120696989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_2
Clp_N
AAA_lid_9
ClpB_D2-small
AAA
AAA_5
AAA_16
UVR
Sigma54_activat
AAA_22
TniB
nSTAND3
NBD_SMAX1
AAA_14
Zeta_toxin
AAA_18
AAA_28
NACHT
AAA_25
RsgA_GTPase
AAA_24
IstB_IS21
Torsin
Motif
Other DBs
NCBI-GeneID:
120696989
NCBI-ProteinID:
XP_039836004
LinkDB
All DBs
Position
3K:4932877..4939523
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AA seq
921 aa
AA seq
DB search
MAGTLLQSVALGTTFAGRISTQQLRSHGARRPVSMLAMSLSRPVKMSAFVGLRSVHSFSI
TPTVSNSRSAVASYRSSRRTRRSRFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTE
QILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGNGFVAVEIPFTPRAKRVLELS
LEEARQLGHNYIGSEHLLLGLLREGEGVAARVLESLGADPSNIRTQVIRMIGETTEAVGA
GVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGE
PGVGKTAIAEGLAQRISTGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK
QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPA
LERRFQPVKVPEPTVDETIEILRGLRERYEIHHKLRYTDEALIAAAKLSYQYISDRFLPD
KAIDLIDEAGSRVRLQHAQVPEEARELDKELKQITKQKNEAVRSQDFEKAGELRDREMEL
KAQITALIDKSKEMSKAEEESGETGPMVNEADIQHIVSSWTGIPVEKVSSDESDKLLKME
ETLHRRVIGQDEAVVAISRSIRRARVGLKNPNRPIASFIFAGPTGVGKSELAKTLAAYYF
GSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAH
PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDSDEKDS
SYGRIKSLVIEEMKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLQEVFDRLKAKDIN
LQVTEKFKERVVDEGYNPSYGARPLRRAIMRLLEDSLAEKMLAGEVKEGDSAIVDVDSEG
KVVVLNGQGGIPELSTPAVAV
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaactttactccagtcagttgccctcggaacaacatttgcaggtcgcataagc
acccagcaattgaggtcccatggcgccaggaggcctgtctctatgttggcaatgtcgctt
agccgccctgtcaagatgtcagcatttgttggcctaagatcggtacatagcttctcgatc
acaccgacagtgtccaattccaggtcagcagttgcatcttacagatcgtctcggcggaca
aggcgttctcgttttgttactcgggcgatgtttgagaggtttacagagaaagctattaag
gtcatcatgcttgcgcaagaggaagcaaggcgcctgggtcacaactttgttggaaccgag
caaattctcttgggtctgatcggagagggcactggtattgcagcaaaggtgctcaagtcc
atgggtataaatctcaaggatgcacgtgtggaagtggaaaagatcattgggcggggcaac
ggctttgttgctgttgaaataccattcacaccgcgcgctaaacgtgttttggagctctca
ttggaggaagctcgccaattaggacacaattatattggatctgagcacctgcttcttgga
ctgcttcgcgagggtgaaggtgtggcggctcgtgtacttgagagtctcggagctgaccct
agcaatatccgtacacaggttatccgaatgattggggagaccacagaagctgttggtgct
ggagttggaggagggagtagtggtaataagatgccaacacttgaggagtatggaactaat
ttaacaaaattagcagaagagggaaagctagatcctgttgttggtaggcagccacagatt
gagcgtgtggtacaaattttaggcagacgaacaaagaacaatccctgcttgattggagag
cctggtgttggaaagactgcaattgctgaggggcttgctcaacgcatttctactggcgat
gtgcctgagacgatagaagggaaaaaggtcattacccttgacatgggacttcttgttgct
ggcacaaaataccgtggagaattcgaagaaagattaaagaagctgatggaagaaatcaag
caaagtgatgagataatactctttattgatgaagttcacacactgataggagcaggagca
gctgaaggtgctatcgatgctgctaatattttgaagccagcattagcaagaggtgaatta
cagtgtattggagcaactacacttgatgaatataggaagcacattgagaaagacccagcc
ctggaaaggcgtttccaaccagtgaaagtgccagagccaacagtagatgaaaccatagaa
attctcagaggacttagggaacgatatgagatccatcataaacttcgttacactgatgaa
gcactgatcgcagctgcaaagctttcatatcaatacatcagtgatcgtttcctcccggac
aaggcaatcgacttgattgatgaagcaggttcccgtgttaggctacagcatgcacaggtt
cctgaggaagcaagagagcttgataaggagctcaaacaaataacaaaacagaagaacgaa
gctgttcgtagccaggattttgaaaaggctggagagctgcgagaccgtgaaatggaattg
aaggcgcaaataacagccctcattgacaagagcaaggagatgagcaaagcagaggaggaa
tctggagagacaggaccaatggttaatgaagcagatatccagcacatagtgtcgtcatgg
actggcattccagtggagaaggtctctagcgatgaatctgataagcttcttaagatggaa
gagactttgcacagacgtgtcattggccaagatgaggctgttgtagcaattagtcgctcc
atccgccgtgctcgtgtgggcctcaagaaccccaacaggccaattgcaagctttattttc
gcaggtcccaccggtgttgggaagtcagagctcgcaaagacccttgctgcctattacttt
ggctctgaggaggctatgatccggcttgatatgagtgaatttatggagaggcacacagtg
tccaagctgatcggttcacctccaggatatgttggatacactgagggtggccaactgaca
gaggcagttcgacggcggccatacacagttgtgctctttgatgagattgagaaggcacac
cctgatgtcttcaacatgatgctccagattttggaagatgggaggttgaccgacagcaag
ggaagaacggtggacttcaagaacaccctcctgatcatgacctcaaatgttgggagcagt
gtcatcgagaagggtgggcgcaagattggttttgacctcgactctgacgagaaggacagc
agctacggcaggatcaagagcctcgtcattgaggagatgaagcagtacttccgccctgag
ttcctcaaccgtcttgatgagatgatcgtcttcaggcagctcaccaagctcgaagtcaag
gagattgcggacatcatgctccaggaggtctttgaccgactcaaggccaaggacatcaac
ctgcaggtcactgagaagttcaaggagcgggtggtggacgaaggctacaaccccagctac
ggtgcgcggccgttgaggcgggctatcatgaggctgctggaggacagccttgcagagaag
atgcttgctggggaggtcaaggagggtgactccgccattgtggatgttgactcagagggt
aaggtcgtcgtgctcaatggtcagggtggcattcccgagctctcaactcctgcggtcgcc
gtttag
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