Panicum virgatum (switchgrass): 120697024
Help
Entry
120697024 CDS
T07260
Name
(RefSeq) stromal 70 kDa heat shock-related protein, chloroplastic-like
KO
K03283
heat shock 70kDa protein 1/6/8
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
pvir04141
Protein processing in endoplasmic reticulum
pvir04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120697024
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120697024
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120697024
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120697024
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120697024
03009 Ribosome biogenesis [BR:
pvir03009
]
120697024
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120697024
04131 Membrane trafficking [BR:
pvir04131
]
120697024
03051 Proteasome [BR:
pvir03051
]
120697024
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120697024
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120697024
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-5
PP5-interacting proteins
120697024
Spliceosome [BR:
pvir03041
]
Complex B
Other components
Prp19 complex
120697024
Complex C
Prp19-CDC5 complex
120697024
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
120697024
Chaperones and folding catalysts [BR:
pvir03110
]
Heat shock proteins
HSP70 / DNAK
120697024
Membrane trafficking [BR:
pvir04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
120697024
Autophagy
Chaperone mediated autophagy (CMA)
Chaperones
120697024
Proteasome [BR:
pvir03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
120697024
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial protein import machinery
Endoplasmic reticulum membrane and cytosol
Other ER-memrane and cytosol factors
120697024
Exosome [BR:
pvir04147
]
Exosomal proteins
Proteins found in most exosomes
120697024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
ParM_N
FtsA
Hydantoinase_A
Motif
Other DBs
NCBI-GeneID:
120697024
NCBI-ProteinID:
XP_039836048
LinkDB
All DBs
Position
3K:5303255..5308130
Genome browser
AA seq
703 aa
AA seq
DB search
MASFTCSQVGAAAAGGASPFLFSRRGSSGGPEGVTSPFVGRRLAAVRMRAPARGARGGAA
LRVTCEKVVGIDLGTTNSAVAAMEGGKPTVVTNAEGARTTPSVVAYTKTGERLVGQIAKR
QAVVNPENTFFSVKRFIGRKMSEVDDEAKQVSYGVVKDENGNVKLDCPAIGKQFAAEEIS
AQVLRKLVDDASKFLNEKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAAS
LAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLA
SNFKKDEGIDLLKDKQALQRLTEAAEKAKMELSTLTQANISLPFITATADGPKHIEATLS
RAKFEELCSDLIDRLKTPVNNALRDAKLSVSDLDEVILVGGSTRIPAVQELVRKLTDKDP
NVTVNPDEVVSLGAAVQGGVLAGDVKDVVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTS
KSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDAN
GILSVAAIDKGTGKKQDITITGASTLPKDEVERMVEEADKFAKEDKEKRDAIDTKNQADS
VVYQTEKQLKELGDKVPAPVKEKVDVKLQELKDAISGGSTQSMKDAMAALNQEVMQIGQA
MYNQPGAGAAGPTPDAEAGTPGAGPAKGPNDGDVIDADFTDSN
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctttacctgctcccaggtcggcgcggcggccgcgggcggcgcctcgcccttc
ctcttctcccggcgggggagcagcggcgggcccgagggggtcacctcccccttcgtgggc
cgccggctcgcggcggtgcggatgcgcgcgcccgcccgcggggcccgcgggggcgccgcg
ctgcgggtcacctgcgagaaggtggtggggatcgacctcggcaccaccaactccgccgtc
gccgccatggagggcggcaagcccaccgtcgtcaccaacgccgagggcgcgcgcaccacg
ccctccgtcgtcgcctacaccaagaccggggagcgcctcgtcggccagatcgccaagcgc
caggccgtcgtcaaccccgagaacaccttcttctccgtcaagaggttcatcggccgcaag
atgtccgaggtcgacgacgaggccaagcaggtctcgtacggagtcgtcaaggacgagaac
ggcaacgtcaagctcgactgcccagccatcggaaagcagtttgccgccgaggagatttcc
gcgcaggttttgcggaagttggtggatgatgcctctaagtttcttaatgagaaaattaca
aaagcagtggtcacagtcccagcatacttcaatgattcacaaaggacagcaacaaaagat
gctggccgtattgcagggctggaagttcttcgtattataaatgaaccaactgctgcatca
ttggcctatggttttgagaagaaaaataatgaaacaattctagtgtttgacttgggaggt
ggtacctttgatgtatctgtattggaggttggagatggtgtgtttgaggtgctttccaca
tcaggtgacacacatcttggcggtgatgacttcgataagagaatagtagactggcttgct
agcaactttaagaaagatgaaggcatcgatcttcttaaggacaaacaagcccttcagcgg
cttactgaggcagcagagaaagctaagatggaactgtcaacgctgacacaggcaaacatt
agcttgccgttcattactgctactgctgatgggccaaaacacattgaggcaaccctctcc
agagccaaatttgaggaactatgttcagacctcatcgacaggcttaaaactcctgttaat
aatgcattgagagatgccaagttatcggtcagtgatcttgatgaagtgattcttgtgggt
ggatccacccgaatccctgcagtgcaagaacttgtgaggaagcttaccgacaaggatcct
aatgttacagtaaaccctgatgaggttgtttctcttggggcagctgtgcagggtggggtt
ttggcgggagatgtgaaagatgtcgttcttctggatgttactccattgtctcttggtttg
gagacattgggtggcgtcatgacaaaaattatccccaggaataccacactgcccacctca
aaatcagaggtattctcaacagctgcagatggacagacaagtgttgagattaatgttctc
cagggagaaagagagtttgtcagagacaacaagtcccttggaagcttccggttggatgga
atcccccctgcacctcgtggtgtcccacaaattgaagtgaagtttgatattgatgcaaat
ggtattctctctgttgctgccattgataagggcactgggaagaaacaggatatcaccatc
actggcgctagtacgctaccgaaggatgaggttgagagaatggtagaagaagctgacaag
tttgccaaggaggataaagagaagagagatgccattgacaccaaaaaccaggcagactcc
gtggtctaccagaccgagaagcaattgaaggagctcggcgacaaagtccctgctcctgtg
aaagagaaggtggatgtgaagctccaggaactcaaagatgccatttctggtggatcaaca
cagagcatgaaggacgccatggctgctttgaaccaggaggtgatgcagattgggcaggcg
atgtacaaccagcctggtgctggtgcagccggacctactcctgatgctgaggccgggacg
cctggtgctggaccagcaaagggacccaatgatggggatgtcattgacgcggacttcact
gatagcaactga
DBGET
integrated database retrieval system
