KEGG   Panicum virgatum (switchgrass): 120697030
Entry
120697030         CDS       T07260                                 
Name
(RefSeq) protein ELC-like
  KO
K12183  ESCRT-I complex subunit TSG101
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03250  Viral life cycle - HIV-1
pvir03272  Virion - Hepatitis viruses
pvir04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    120697030
   03272 Virion - Hepatitis viruses
    120697030
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    120697030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120697030
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pvir04147]
    120697030
Membrane trafficking [BR:pvir04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-I complex
    120697030
Exosome [BR:pvir04147]
 Exosomal proteins
  Proteins found in most exosomes
   120697030
SSDB
Motif
Pfam: UEV Vps23_core DUF1707 UQ_con RWD DUF8621
Other DBs
NCBI-GeneID: 120697030
NCBI-ProteinID: XP_039836055
LinkDB
Position
3K:complement(5379078..5381487)
AA seq 332 aa
MATAAAVGTVVLVDAALAPYEHPDLRWLVRKHVLAVLQEFPTLSPSVDTYTSDDGASTVL
LNARGLLAVSPALPPVLLTLWLPREYPYRPPLVYALPAAPSASLVPDHPFVDHRTGRVHR
TLPYLDEWSVPTSSLAGLVRSLVAALRMCHPLKSTFGFADATTAGATPVEEERRRMHAVL
ANELASRLGRDAAAFRGGVDGDIHALSSLQAGLRARGDAMGRAVRDLEEERMRLERAVTA
SLAHRGQLLAWLCTASRAPDPGAALAPHAAAGDAPRWLESKASELAADDAMDALGHALEN
GDLSFQEYIKRVKVLAREQFFHCYAASTSMNA
NT seq 999 nt   +upstreamnt  +downstreamnt
atggcgacggcggctgccgtcggcacggtggtgctggtggacgcggcgctggccccgtac
gagcaccctgacctccggtggctcgtccggaagcacgtcctcgccgtcctccaggagttc
cccaccctctcgccctccgtcgacacctacaccagcgacgacggcgcctccaccgtgctg
ctcaacgcgcggggcctcctcgccgtctcccccgccctgccgccggtcctcctcaccctg
tggctccccagggagtacccctaccgcccgccgctcgtctacgcgctccccgccgcgccg
tcggcgtcgctcgtccccgaccaccccttcgtcgaccaccgcaccggccgcgtccaccgc
acgctgccgtacctcgacgaatggagcgtgccgacctccagcctcgccggcctcgtgcgg
agcctcgtcgcggccttgaggatgtgccacccgctgaagtccaccttcggcttcgccgac
gcgacgaccgccggagcgacgccggtggaggaggagcggcggcgcatgcacgccgtgctg
gccaacgagctcgcctcgaggctgggcagggacgcagcggccttccgcggcggcgtcgac
ggggacatccatgccctgtcctcgctgcaggccggcctccgggcacgcggcgacgccatg
ggccgcgccgtccgcgacctggaagaggagaggatgcggctggagcgcgccgtgacggcc
agcctcgcccaccgcggccagctgctcgcctggctgtgcacggcgagccgcgcgcccgat
ccgggagcggcgttggctccgcacgcggccgcgggcgacgcgccgcggtggctggagagc
aaggcgtcggagctcgccgcggacgacgccatggacgcccttggccacgcgctggagaac
ggggacctcagcttccaggagtacatcaagcgcgtcaaggtcctcgccagggagcagttc
ttccattgctacgcagcgtccacgtcgatgaacgcctaa

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