Panicum virgatum (switchgrass): 120697038
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Entry
120697038 CDS
T07260
Name
(RefSeq) trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3-like isoform X1
KO
K12450
UDP-glucose 4,6-dehydratase [EC:
4.2.1.76
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00541
Biosynthesis of various nucleotide sugars
pvir01100
Metabolic pathways
pvir01250
Biosynthesis of nucleotide sugars
Module
pvir_M01021
UDP-L-Rha biosynthesis, UDP-Glc => UDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
120697038
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.76 UDP-glucose 4,6-dehydratase
120697038
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
NAD_binding_10
NmrA
Motif
Other DBs
NCBI-GeneID:
120697038
NCBI-ProteinID:
XP_039836092
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Position
3K:5500991..5504889
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AA seq
740 aa
AA seq
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MCVFSAAAQTDHRPLLLLPLLRAPPPPPAFISLLLSSPALAPSLSLSHQPTPSAPAPARR
ASHTQDFRNNHTGDMATNYKPKNILITGAAGFIASHVAIRITKKYPDYKIVVLDKLDYCS
NLKNLLPVSSSPNFKFVKGDIASADLVNFLLVTENIDTIMHFAAQTHVDNSFGNSFEFTK
NNIYGTHVLLEACKITGQIKRFIHVSTDEVYGETDEDALVGNKEASQLLPTNPYAATKAG
AEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGEPLPIHGDGTNVRSY
LYCEDVAEAFEVILHHGEVGHVYNIGTKRERTVIDVAKDVCKLFNLEADKVIMFVENRPF
NDQRYFLDDEKLKSLGWAERTPWEEGLKRTMEWYVANSDYWGDVSGALLPHPRTLMMPGY
EGSEEIKVILSQFNNIKTKVDSTSDSASETHAFKFLIYGRTGWIGGLLGKICEKQGIPYE
YGKGRLQDRSSLILDIQTIKPTHVFNAAGVTGRPNVDWCESHKPDTIRTNVVGTLTLADV
CREHGLLMMNYATGCIFEYDAHHPEGSGIGFKEEDAPNFTGSFYSKTKAMVEELLKEYEN
VCTLRVRMPISSDLSNPRNFVTKISRYNKVVNIPNSMTILDELLPISVEMAKRNLRGIYN
FTNPGVVSHNEILEMYKQYIDPSFKWTNFTLEEQAKVIIAPRSNNEMDASKLKKEFPELL
SIKDSLIKYVFEPNRKVPVN
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgtcttctccgccgcagcgcagaccgaccaccgacccctcctcctcctccccctc
ctgcgcgccccaccaccaccgcctgcatttattagcctcctcctctcctccccggctctc
gcgccctccctctcgctctctcatcaaccgacgccatccgctcccgcgccggcgcgccgc
gcgtcgcatacgcaggatttcagaaataatcatacaggggatatggcgacgaattacaaa
cctaagaacatccttattacaggagctgctggctttatcgcctcccatgttgcgattcgc
attaccaagaagtaccccgattacaagatcgtcgtccttgacaagcttgactactgctct
aatctgaagaacctgcttcctgtgagctcgtccccaaacttcaagtttgtcaagggagat
attgcaagtgctgatcttgtcaacttccttcttgtcacggagaacattgataccataatg
cacttcgcagcccagacacacgttgacaattcatttgggaattcctttgaatttaccaag
aacaacatttatggtacccatgttcttcttgaggcctgcaagatcactggccagatcaag
agattcatccatgtcagcactgatgaggtctatggggagactgatgaggatgcacttgtt
ggaaacaaggaggcatcacagctgctccccacaaatccatatgcagccaccaaagctgga
gcagagatgcttgtaatggcatatgggagatcctatggcctgccggttatcactactcgg
ggaaataatgtctatggccctaatcagtttcctgagaagcttatcccaaagttcattctc
ttggccatgagaggggagcccctccctatccatggtgatggaaccaatgtccgtagctac
ctctattgtgaggatgtcgcggaagcatttgaggtaattcttcatcatggagaagttgga
catgtttataatattggaacaaagagagagaggacggtcattgatgtagcaaaagatgtt
tgcaagcttttcaatttggaagctgacaaagtcattatgtttgtcgagaacagacctttc
aacgatcagaggtatttcttggatgatgagaagctcaagagccttggatgggctgagcgc
accccatgggaggaaggcttgaagaggacaatggaatggtatgttgcaaattccgattat
tggggtgatgtttctggtgcactgctgcctcatccaaggacgttaatgatgcctgggtat
gagggctctgaggagattaaagtaatactcagtcagtttaataacattaagacaaaggtg
gattcaacatcagatagtgcttcagaaacgcatgccttcaagttcttgatatatggtagg
acaggatggatcggtggacttcttggaaaaatatgtgagaagcaaggaattccatatgaa
tatggaaaaggtcgcttgcaagatcgttcttctctcatcctggatattcaaactattaag
ccaacacatgtcttcaatgctgctggtgttactggcaggcccaatgttgactggtgtgaa
tcgcacaagccggacactatccgcaccaatgttgtgggcactttgactctagctgatgtg
tgtagggagcatggcttattgatgatgaattatgccactgggtgcatatttgaatatgat
gcacatcatccagaagggtcaggtatcggcttcaaagaggaggatgcaccaaattttact
ggttcgttctactcgaagactaaggcaatggttgaggagctattgaaggagtatgagaac
gtctgcaccctacgagtccggatgccaatatcttcagacctcagcaacccccgaaacttt
gtgacaaagatcagccgttacaacaaggtggtgaacatccctaacagcatgacaatattg
gacgaactcctgcctatctcagtggagatggcgaaaaggaatctgcggggcatctataat
ttcaccaaccctggcgtcgtcagccacaacgagatcctggagatgtacaagcagtacatc
gaccccagcttcaagtggacaaacttcactctcgaggagcaggccaaggtcatcatcgca
ccccggagcaacaacgagatggacgcgagcaagctaaagaaagagttccctgagctgctg
tcgatcaaagactctttgatcaagtatgtcttcgagcccaataggaaggtgcctgtaaac
tga
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