Panicum virgatum (switchgrass): 120697156
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Entry
120697156 CDS
T07260
Name
(RefSeq) protein argonaute 1B-like isoform X1
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120697156
03036 Chromosome and associated proteins [BR:
pvir03036
]
120697156
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120697156
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120697156
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
120697156
microRNA pathway
RISC loading complex
120697156
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
Gly-rich_Ago1
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Piwi_N
Motif
Other DBs
NCBI-GeneID:
120697156
NCBI-ProteinID:
XP_039836218
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All DBs
Position
3K:complement(6820698..6828153)
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AA seq
1132 aa
AA seq
DB search
MVRKKRTGPGESSGEAPGAPGQGSSQRPETTQQHGGGRGLLPQQGARGGGQHQARGGYQG
RGGPPESQPRDYQGRGGYQGRGGGAPSQQPGGPPQPRDYQGRGGYQGRGVPPSQHPGGGP
PEYQSQEYQGRGGPRPRGGVPQPHYGGRGRGSVGPSVPPGPSRSVPELHQAPYVQYEAPV
AVSPSPPGAGSSSQPAEAEVSTGQVQQQFQQLAITGQGSTGQAIQMAPASSKSVRFPLRP
GKGTYGSRCIVKANHFFAELPDKDLHQYDVSITPEVPSRGVNRAVMGQLVTLYRQSHLDG
RLPAYDGRKSLYTAGPLPFTSRTFEITLQDEEASLGGGQRRERVFKVVIKFAARADLQHL
AMFLAGRQPDAPQEALQVLDIVLRELPTARYCPVGRSFYSPNLGRRQQLGEGLETWRGFY
QSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVSQLLNRDISVRLLSDSDRVKIKKALRGVK
VEVTHRGNMRRKYRISGLTSQATRELSFPIDDRGTVKTVVQYFLETYGFSIQHTSLPCLQ
VGNQQRPNYLPMEVCKIVEGQRYSKRLNEKQITALLKVTCQRPQEREKDILQTVHHNAYF
EDPYAQEFGIKIDERLASVEARVLPPPRLKYHDSGRERDVLPRVGQWNMMNKKMVNGGRV
SSWACINFSRNVQDNAARSFCHELAQMCQVSGMDFALDPVLPPSSARPEHVERALKGCYQ
DAMNILRPQGRELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKANKQQYL
ANVALKINVKVGGRNTVLVDALARRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVAS
QDWPEVTKYAGLVSAQAHRQELIQDLFKVWQDPQRGTVTGGMVRELLISFRRATGQKPQR
IIFYRFLSLCMGTFSDNDSQYIKPRTTFRDGVSEGQFYQVLLYELDAIRKACASLEPNYQ
PPVTFVVVQKRHHTRLFANNHNDQRSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQ
GTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYM
EPDTSDSGSMVSGAGASRVPPPGSSRSSRAGGTAVRPLPALKENVKRVMFYC
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atggtgaggaagaaaagaactggccctggagagagttctggggaggctcctggagcgcct
ggacagggctcctcacagcgacctgagacaactcaacagcatgggggaggacgtggttta
ctgcctcaacaaggtgcccgtggtggaggccaacaccaggcccgcggtggatatcagggc
cgtggagggccacctgagtctcaaccgcgtgactaccaggggcgtggtgggtatcagggc
cgtggaggtggcgcaccttcacaacagcctggtgggccacctcaaccgcgtgactaccag
ggccgtggtggataccagggccgtggagtcccaccttcacaacatcctggtggtgggcca
cctgagtatcagtcacaggagtaccagggacgtggtggtccacgccccagagggggagtg
cctcagccacactacggcgggcgtgggcgtggtagtgttggaccaagtgttcctccaggt
ccttcgagatcagttcccgagctgcaccaagccccatatgtccaatatgaagcccctgtg
gcggtatcaccatccccaccgggagctggctcttcctcgcagcccgcggaggctgaggtg
agcacaggacaagtccagcaacagtttcagcaacttgctattactggtcagggttcaacc
ggtcaagccattcagatggcaccagcatcaagcaaatcagttagattcccattgcgccct
ggcaagggtacttatggctccaggtgcattgtgaaggcaaatcatttctttgctgagctg
cctgataaagaccttcaccaatacgatgtttctattacgcctgaggttccttcacgtggc
gtcaatcgtgctgtcatgggacagcttgtaactctttatagacagtctcatttggatggg
cgtctacctgcatatgatggaaggaagagcctttatacagcgggaccattgccatttaca
tctaggacatttgaaattactctgcaagatgaggaggctagtcttggtggaggccaaagg
cgcgaaagggtatttaaggtggtgatcaaatttgccgcccgcgctgatctccaacatctg
gctatgtttctagctgggagacaaccagatgctcctcaagaggctcttcaagtacttgac
attgtactacgtgaattgcctacggccaggtattgtcctgttggtaggtcattttattct
cccaacttagggagacgccagcaacttggtgagggtttggaaacttggcggggtttctac
caaagcataaggcccacacagatgggtctttctctgaatattgatatgtcctctactgca
tttattgagcccctccctgttattgatttcgtttctcagcttcttaacagagatatctca
gttagactgttatctgattctgatcgtgtgaagattaaaaaagctctacgaggtgtaaaa
gtagaagtcacacaccgagggaacatgcgaaggaaatatcgtatatctggcctcacttca
caggcaacaagggagttatcatttcctattgatgatcgtggtaccgtgaagaccgtggtg
caatacttcctggagacttatggcttcagtattcagcacacttctttgccttgcttgcaa
gtgggcaatcaacaaagaccaaattatctgcctatggaggtctgtaagatagttgaggga
cagcgttactcaaaacgactcaatgagaagcagatcactgctctactgaaagtgacttgc
cagcgtcctcaagagcgtgagaaagacatcctgcagactgtgcatcacaatgcatacttc
gaagatccatatgcacaggaatttggcataaagattgatgagcgtcttgcatctgttgaa
gctcgtgttctgcctcccccaaggctgaaataccatgacagtggcagagagagggatgtg
ttgccaagagtcggccagtggaacatgatgaataagaaaatggtcaatggaggtagagtt
agtagctgggcatgcattaacttctcacgaaatgtgcaagataatgctgccaggagtttc
tgtcatgagctggctcagatgtgccaagtatcaggaatggacttcgcacttgatcctgtg
ctaccaccatcctctgcgaggcctgaacatgttgaaagagcactaaagggatgctatcaa
gatgccatgaacatactgagacctcagggccgagaacttgacctgcttattgtaatactg
cccgacaataatggctcactttatggggatctaaaaaggatctgtgagactgatcttggc
ttggtctcccaatgttgtctgacgaaacatgttttcaaggcgaacaaacagcagtatctt
gcaaatgttgcccttaaaataaatgttaaggttgggggaaggaatactgtgcttgtagat
gctttggcaaggagaattccccttgtcagtgacaggccaaccattatatttggtgctgat
gttacccatccccatcctggagaagattctagtccttccattgcagctgtggttgcttct
caagactggccggaggtcaccaagtatgcaggattagtgagtgcccaagcccatcgccaa
gagttgatacaggatcttttcaaagtatggcaagatccccaaagagggactgtcactggt
ggcatggtcagggaacttctcatttcattcaggagggcaacaggacagaaaccccagagg
atcatattctacaggttcctatccttgtgcatgggcaccttttctgacaatgattcacag
tatattaaaccacgtactactttcagggatggtgttagcgagggacagttctatcaagtt
ttgttatacgaacttgatgccattagaaaggcctgtgcatcgttggagcccaattaccag
cctccagttacttttgtagtggtccagaagcgtcatcacactaggttgtttgctaacaac
cacaatgatcagcgttctgttgatagaagtggaaacatactgcctggcactgtggtggat
tcaaagatttgccatccgactgagtttgatttctacctgtgtagccatgctggcattcag
ggaacaagccgccccgcacattatcatgttctgtgggatgagaacaattttacggctgat
gggttacaatctctcaccaacaacttgtgctacacgtatgctaggtgcacacgctcagta
tcagttgtgcctcctgcatactatgctcacttggcagccttccgagctcgcttttatatg
gagccagatacctctgacagcgggtcaatggtgagcggtgctggagcgagccgtgtccct
ccacctgggagttctcgcagctccagggctggtgggactgctgtgaggcctttacctgcc
ctcaaggaaaacgtgaagcgtgtcatgttttactgctaa
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