Panicum virgatum (switchgrass): 120697292
Help
Entry
120697292 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120697292
KO
K11671
nuclear factor related to kappa-B-binding protein
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120697292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120697292
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
120697292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ASXH
Motif
Other DBs
NCBI-GeneID:
120697292
NCBI-ProteinID:
XP_039836389
LinkDB
All DBs
Position
3K:8209740..8215294
Genome browser
AA seq
1317 aa
AA seq
DB search
MAIVRTGAGVRHPRLDGGGEGSPEAMEDDEESRATPSQESEADGISGGEEEEEEENGGGG
EGPEEAEDELREEELELEQEEEEGDSGMGSDELEVTELGEPGAEMCQVGDQSVAVPLELY
DLAGLCDVLSLDAWNTLLSEDERLRLAALLPDMDQETFARTLVELLSGQNFHFGSPLAAL
FKQLKGGLCDPRVNLYRRGTRFAERRKHYYWLQSYHNSMVRGLREIKDCWKGREGYSLDE
RLRMLEALKTQKQQRKALASARQAGSETDSESRESGKQVLNQLKLDKIAQKKAGKLVKER
SKGLLRVNMTKGVDEDYGGGSGRDAAVALSRQDNAYGYDSGTHRRKLHRSIDGLYSEELG
YERDSSRTQFPRLLPKPVKKELTMSYDGNLYGNNYRDNNNASPYYYGRNPGPNQGVTLAA
AYDPPYFDTRRNARYSERDWVQGGKGVQSKALTGDEMHWTAGSHIGEVDDWQKGQLAGDY
RSRKDRAGYGQKVKYYKSIEQQANDARIGNPRSKISQVKMAGKPGSQFDRIGQKHSRGNA
AYSQSETESDSSEQFEDSGDVHFLEQKPEHHHSGFHRKAHGAKKSKKLSKVVKMNYATAD
ADLEPSRSKGFKGKVSEAGYLRDVDVKMTEQISDVMKPPAASGERKRKGMANLETHVHDI
SEQHEINENANDSFRLTESERLASKPVQDSNGDFSGIERVSGSTGSKKTKGRVEVPSLDE
HSEHVPSGPKMADNISGPKKKSKKKPESTPDAVTVAEPAADVPEDNVVAVEPEKIEKPKK
KYVPISPTIHTGFSFSVVHLLTAVKKAMVSPVEDTPAAEKQPDGEEGKKWFNNEEQNKTP
QEQSMTEQAQQALEGADASAAEQNVVSNSPALTVQEIVNRIRSNPGDPRILETQEPLQDL
VRGVLKVLSSRTAPLGAKGWKALVAYEKSNKSWFWVGPAPSISSYDDPDEETSAEAWCIP
HKMLAKLVDAFSNWLKSGQETLKQIGSLPPPPPPNPANLDLKERFKELRAQKSLNTISPS
SDEARAYFQREEFLRYSIPDRAFCYTAADGEKSIVAPLRRGGGKPTAKARGHPMLLPDRP
PHVTILCLVRDAASRLPARTGTRADVCTLLRDSQYLNHEEANKEAAINQVVSGALDRLHY
ERDPCVLYDNDKKLWTYLHRGREEEDFEDDGTSSTKKWKRPRKDPSDPAEPGAANDDFDD
DGTGTPLANNAKKQKTDHGDPTVSGEANDEGDNATQNPSCGGLEGDPDINVPSSKNSEES
VGVVYIDARPDDGGSNSVDAKPGSTADDNPASWQSVQEQNKNSSTLPGNTSMDATLP
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcgtgaggaccggcgccggcgtccggcacccgaggcttgacggcggcggggag
ggctcgccggaggccatggaggacgacgaggagtcgcgggccacgccgtcgcaggagtct
gaggccgacggcatctccggcggcgaagaggaggaggaggaggagaacggcggcggaggt
gagggaccagaggaggcggaggatgagttacgcgaggaagagttggagctggagcaggag
gaagaggagggggactcaggcatgggttctgacgagctggaggtcacggagctcggggag
cctggcgccgagatgtgccaggtcggggaccagagcgtcgccgtgccgctggagctctac
gacctcgccggcctctgtgatgtgctttcgctcgatgcctggaacaccctcctcagcgag
gacgagcggctccgtctcgccgccttgctgcccgacatggaccaggagacctttgcccgc
accctcgtcgagctcctctcagggcagaacttccactttgggagccccctggccgccctc
ttcaagcagctcaaaggggggctgtgtgaccccagagtcaacctgtatcgccgtggcacc
cgctttgcagagcggcgcaagcattactactggctgcagagctaccacaactcaatggtg
cgggggctgcgggagatcaaagattgctggaagggccgtgaggggtacagccttgatgag
aggctgaggatgttggaagctttgaagacacagaagcagcagagaaaagctttggcttcg
gctcggcaggctgggtcagagactgattcggagagcagggagtctgggaaacaggtctta
aatcagctgaagctagataaaattgcacagaagaaggcagggaagttagtgaaggagagg
tctaagggcttgctgcgggtgaatatgacgaaaggagtggatgaagattatgggggaggg
tctggccgtgatgctgcagtggcactttctcgtcaagacaatgcgtatggatatgattcg
ggcacacatagaaggaagcttcataggagcatagatggcctttactcggaggagctagga
tatgaacgggattcgtccagaactcagtttccgaggctgctgccgaagccagtgaagaag
gaattgactatgagctatgatggcaatctgtatggaaacaactaccgcgataacaataat
gcttctccatactactatggcaggaatcccggtcctaatcagggagtcactctagcagca
gcatatgatcctccatattttgacaccagaaggaatgcaaggtactcggagagggactgg
gtacaaggtggaaaaggtgtgcagagtaaagctctgacaggggatgagatgcactggact
gctggtagccacattggtgaagtagatgactggcaaaaagggcagttggcaggtgattac
aggagcaggaaagatcgagctggatatggtcagaaggttaagtactataaaagcattgag
caacaggctaatgatgctcgcattgggaaccctagaagcaagatatcacaggtgaagatg
gcaggtaaacctggtagccaatttgataggattggccagaagcactccaggggcaatgct
gcctattctcaaagtgagacagaatctgattcatcagaacagtttgaagatagtggggac
gtgcattttcttgaacagaagccagagcatcaccattctggatttcatagaaaagcacat
ggtgccaaaaagtcaaaaaagctttctaaagtggtcaaaatgaactatgctactgctgat
gcagatttagaaccctctcgaagcaaaggattcaaaggaaaggtttcagaggctggttat
ttacgtgatgtggatgtgaagatgacggaacagattagtgatgtcatgaaacctccagca
gcaagtggtgaaaggaagcggaaggggatggcaaatttggaaacacatgttcatgatatc
tccgaacagcatgaaatcaatgaaaacgccaatgattcattcaggctaacagagagtgaa
aggcttgccagtaaaccggtccaagattctaatggtgattttagtggtattgaaagagta
agtggcagcactgggtccaaaaaaacaaaaggaagagttgaagttcctagcctggatgag
cacagtgagcatgtgccatctggtccaaaaatggccgacaacatcagtggcccgaagaag
aaaagcaaaaagaagccagagagcaccccagatgcagttactgtagcagaaccagctgct
gatgttccagaagataatgtagtagcagtagagcctgagaagattgagaagccgaagaag
aagtatgtaccaatatcaccgactatccatactggcttttcattctccgttgtacatctt
ttaacagctgtaaagaaggctatggtctctcctgttgaggatactccagcagcagagaag
caacctgatggagaggagggcaaaaaatggttcaacaatgaagagcaaaacaaaacgcct
caagaacaaagtatgacagaacaagctcagcaggctcttgagggtgcagatgccagtgct
gcagagcagaatgtagtgagcaattcaccggcacttactgttcaagagatcgtcaatcga
attagatcaaatcctggagatcctaggatacttgaaacccaggagcccctccaggattta
gttcgaggagtattgaaggtactgtcatctagaacagctcctctaggtgcaaagggctgg
aaagctctagttgcctatgaaaagtcaaacaaaagttggttctgggttggtccagcacct
tctatttcatcatatgatgatcctgatgaagaaacttctgcagaagcatggtgtataccg
cacaagatgcttgcgaagttggtggatgcattttctaattggctgaaaagtggtcaggaa
accctcaagcagataggatcccttccaccacctccaccaccaaatcctgctaacttggat
ttgaaagaaagattcaaggagcttagagcccagaaaagtcttaacacaataagcccaagc
tcagacgaagcaagggcatatttccagcgtgaggaatttttgaggtactccatacctgat
agagccttttgctatactgctgctgatggggagaagtctatagttgctcccttgagaaga
ggaggtggaaagcccactgctaaagctaggggtcaccccatgctcttacctgatcgtccg
ccgcatgttactatcctctgtcttgtaagagatgctgcttctcggttgcctgcaagaact
ggaactagagctgatgtctgcacactactcagagattcacaatacctaaaccatgaagaa
gccaataaagaggctgctattaatcaagttgtcagtggtgctcttgatcgcttgcactat
gaacgtgatccttgcgtactgtatgataatgacaaaaaattgtggacctatctacacagg
ggtagggaggaggaagattttgaggatgatggcacgtcatctacgaaaaaatggaagaga
ccgaggaaagatccctctgatccggcagagcctggtgcagcaaatgatgattttgatgat
gatggcactggcacccctttggcgaacaatgcaaaaaagcaaaagacagaccatggagat
cctacagtatcaggagaagctaatgatgagggagataatgcaactcagaatccatcttgt
ggtggcctggagggtgatcctgatattaatgttccatcatcaaaaaattccgaagaatca
gttggagttgtttacattgatgcaagaccagatgatggtggctcaaattcagtagatgca
aaaccaggcagcacggctgatgataacccagctagttggcagtcagtccaagaacagaat
aaaaacagctcgacactccctgggaacaccagcatggatgctaccctgccatga
DBGET
integrated database retrieval system
