Panicum virgatum (switchgrass): 120697303
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Entry
120697303 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4-like isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120697303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120697303
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
120697303
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
HECT type E3
120697303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
Motif
Other DBs
NCBI-GeneID:
120697303
NCBI-ProteinID:
XP_039836404
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All DBs
Position
3K:8360134..8367370
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AA seq
1359 aa
AA seq
DB search
MEVAEEAGVAVLAYALAAIADEGAGAGETAAALAALCDVLALSGPDLIFALPSAPLAKRL
PRLVAASASGDGDGDVPLLAARAMAEACEGAPQWAERFAQHGAVEALRDRLLTVDCIELA
EECLRVLDAISTECPDECLKRGVAAAVLQFFDFFSTNKQKVALQIVSNIFNDYDEEDAPT
VMEAVPALCNLLQSSDKTILESAISCMALVAAGVSKNAEHMGKLCETNVVEATMSLMGNE
GWKSLSDDTLTGILGLLKNLVSISEKAVESLFKLDFCEFFKQMITYYSSSNRDNDKVQML
VELIYQLMQPLGASEQHAKLVTGKKNVIMGQSTYMNQLSSIVALMVQIAKCAALSSICYN
CVAAISNIVELSTPSLLMELQNTVNLSSFLTFLLARRNRHIIFQALKISRTLLEKRQQFF
LETFTKEGVKHSIDSIVSQEKNSSHQSKRKNNMNESCLCFDLESSLTGEACRVENNAVMK
LAEDIKRSFFSVKGSQRSPHRFGFALKSFRDFFVRLNVHAATPPTENQDSCKQLSDLSRR
LLSDELPVTSTFEFAQSGSIKCLSIYLSNGAYCNTDLSGGQDLLGHLSEVQSRLQKFASL
ALTVPNDSSANPLGVLVEKLLDTLHMCYDSFPVMLSDEQSTRESMMIPLRYPETQELASL
ELKFRRSQREKELRNYNDVLSVDLFSTPDAIEPVLFPKICRTDQEPAPKNSNQENEANGS
TKLGASKNDDGNRSSKLRFLYNGVILQPSATFFESILRLMNKGQSDISIEPSFWDEEHNI
TYRKRNRSKEIPSESSYDIKVSHVQENLQQAWLKDPFFTAILLGKLPGDLDVSDPSYNLL
FMLKVLEGLNRFSYPLLMDEQIRKFAEGTIQDIDLKVAIYPVPQHQFMSSILTNKLELQM
QDSLFEGGLIPSWCVYLIDSCPFLLSFNTRWKYFCLTAHRSFMTYQVNNSPDQVKNILDQ
VSGHSDQVKSPPQTKKYRVSRSASLEGAVSMMTNHDPSCRIVEVEFEGEVGTGRGPTFEF
YTTVSHELQRAGLGMWRGDNCEDRFIHASFGLFPKPWSPSGTQGIEFSNVLQKFKLLGHL
VVRAVLDGRILDIPLSKAFYKIMLDKELDIYDIASFDPELGKTLIEFQALVNKKKFLEKS
SRTSNHTAVLSYKNVKLEDLCLDFTLPGSPEYELIPGGSEKMVTLDSLEEYVYLVVDATL
KCGIAKQIEAFKSGINEIFALKTLKMFTEEEMECILCGEQDAWALKNLEDHMDFEHGYDM
SSPLIITFLEILREFGREEQRAFIQFTTGAPQLPLGGLALLDPKLTVVCKKCDGNVDDEL
PSVNTCRHFIKLPPYSSKEIMREKLKYAITEGLGSFHLS
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggccgaggaggcgggggtggcggtgttggcctacgcgctggccgcgatcgcc
gacgagggcgcgggggccggggagacggcggccgcgctcgccgcgctctgcgacgtgctc
gcgctctcggggccggacctcatcttcgccctcccctccgcgccgctcgccaagcgcctc
ccgaggctcgtcgccgcctccgcctccggggacggcgacggcgacgtgccgctgctggcc
gcgcgcgccatggccgaggcgtgcgagggcgcgccgcagtgggccgagcgttttgcgcag
cacggcgccgtcgaggcgctccgcgacaggctgctcaccgtcgactgcatcgagctcgcc
gaggagtgcttgcgagttctggacgccatatctacagaatgccccgacgagtgcctcaaa
cgtggggtagcagcagctgtgctacagttcttcgacttcttttcaacgaacaagcagaaa
gtggcactccagatcgtctcgaatatcttcaatgattacgatgaagaggatgcgccaacg
gtcatggaggccgtgcctgctctgtgcaacctcctgcagtcttctgataagacgattctt
gaatccgctatttcttgcatggcattggtcgctgctggcgtttccaaaaatgctgaacac
atgggtaagctctgcgaaacaaatgtggttgaggcaacgatgagcttgatgggtaacgag
gggtggaagagcctcagtgatgacacgttaactggcattcttgggctgcttaaaaatctt
gtctctatctctgaaaaggccgtggagtctctttttaagttggatttttgtgaatttttc
aagcagatgataacttactacagttcctcaaaccgtgataatgataaggtgcagatgctt
gtggagctcatttaccagcttatgcagcctcttggagcatctgagcaacatgctaaacta
gtcactggaaagaagaatgtcatcatgggacaaagtacatacatgaaccagctttccagc
attgttgcccttatggtacagattgcaaaatgtgctgcattatcatcaatttgctacaac
tgtgtcgctgccatcagcaacattgttgaattaagcacacctagtctcctgatggagtta
cagaatactgtaaatctctcgagcttccttacttttttgttggcccggagaaatcgccac
atcatattccaagcactcaagatttcaaggaccctcctggagaaacgccagcagtttttc
ctcgagacctttactaaggagggtgttaagcattcaattgattccatagtatcacaagaa
aaaaactcgagtcaccagtcgaaaagaaagaacaacatgaatgaaagttgcctttgcttt
gacctggagtcttccttgactggcgaggcatgtagggttgagaacaatgctgtcatgaaa
ctagcagaagatataaagagaagcttcttctcagtgaaaggaagtcaaagatctccacat
aggtttggatttgctcttaaaagtttcagggacttttttgttaggttgaatgttcatgcc
gcaacaccccccactgaaaatcaagatagctgcaaacaattgtctgatctttcaaggaga
ctattgtcagatgaactgccagttacttctacctttgagtttgcacagagtggatcaata
aaatgtttgtcaatttatctctcaaacggggcatactgcaatacagatctcagtggtgga
caggatctactagggcatcttagtgaggtgcagagtcggctgcagaaatttgcttctttg
gctctcactgttcccaatgacagctcagctaatcctcttggggttttggtggagaagcta
ctagacaccttgcacatgtgctatgacagttttcccgtaatgctatctgatgaacagagt
acacgtgagagcatgatgattccactgcgatatcctgagacccaggaactagcgtcattg
gaattaaaattccggaggtcacagagggagaaggaattgcgcaactacaatgatgttctc
agtgtcgatcttttctcaacacctgatgccattgaaccagttctatttcctaaaatttgc
agaactgatcaggaacctgcacccaagaattcaaatcaggagaacgaagcaaatgggagc
acaaaattaggtgcgtccaaaaatgatgatggtaacagatcctcaaaactgagattcttg
tacaatggcgtgatactacaaccatctgctacattttttgagtcaatcctccgtttgatg
aacaagggacaatctgatatctcgattgaaccatctttctgggatgaagaacacaatata
acctataggaagagaaacagaagcaaggagatcccttcggagagttcctacgatattaag
gtttcgcacgtgcaagaaaaccttcagcaagcatggttaaaggacccttttttcacagcc
atacttcttggcaaacttcctggtgatttggatgtgtccgatccatcgtacaatctcttg
ttcatgctgaaagttcttgaagggctgaaccgtttttcgtatccactgttgatggacgaa
cagataaggaaatttgctgaaggaactatacaagatattgatctgaaggtggcaatttat
ccagtcccacagcatcagttcatgagcagcattttgacgaataagctagagctgcaaatg
caggatagtttgtttgagggtggcctcataccctcgtggtgtgtctatctgatcgattcc
tgccccttcctattatccttcaacacacggtggaagtacttttgcctgactgcacatcgc
tcattcatgacttaccaggtgaacaattctccagaccaggtcaaaaatatcttggaccaa
gttagcggtcactcagaccaggtcaagagtcctccacagactaaaaagtatcgagtaagc
cgaagtgctagccttgaaggcgctgtatcaatgatgaccaaccatgatccaagctgcaga
atcgttgaggtggaatttgaaggagaggttgggactgggcgaggtccaacgttcgaattc
tatactacagttagccatgaactccaaagagccgggcttggaatgtggagaggagacaac
tgtgaagatagattcattcatgcctcttttgggctatttccgaagccgtggtcgccgtca
ggcacacaagggattgaattttctaatgtgctacagaaattcaagcttctggggcatctt
gttgtgagagcagtcctggatggaaggatcctggacattccactttctaaagcattttac
aagatcatgcttgacaaggagctcgatatatatgacatcgcgtcatttgatccagagctg
ggcaagacattaatagagtttcaagcacttgtcaacaagaagaaatttctagaaaaatct
tcaagaacatctaaccataccgctgttttgtcctataaaaacgtgaaattggaggatttg
tgccttgacttcactcttccaggaagtcctgaatacgaacttattcctggaggctcggaa
aagatggtgacacttgacagtttagaggaatatgtatatttggttgttgatgcaacactg
aagtgcgggattgctaagcagatagaggctttcaaatctggaattaacgagatttttgcc
ctcaagaccctcaaaatgtttactgaggaggaaatggaatgcatactatgtggtgaacag
gatgcttgggctttaaagaaccttgaggatcacatggactttgagcatggctatgacatg
agcagtccattgattattactttcctggagatattgcgggagtttggaagagaggagcag
cgggctttcattcaattcactactggagcgcctcaactcccacttggtggcctagctttg
cttgatcccaagctcactgtagtgtgcaagaaatgtgatggcaatgtagatgacgaattg
ccaagtgtcaatacctgccggcactttatcaagctccctccttactcgtcgaaggagata
atgagagagaagctcaaatatgcaattacagagggtttaggctcctttcacttgtcatga
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