Panicum virgatum (switchgrass): 120697318
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Entry
120697318 CDS
T07260
Name
(RefSeq) WD repeat-containing protein RUP2-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
pvir04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120697318
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
120697318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120697318
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120697318
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120697318
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120697318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-GeneID:
120697318
NCBI-ProteinID:
XP_039836461
LinkDB
All DBs
Position
1K:complement(1175577..1177644)
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AA seq
430 aa
AA seq
DB search
MSNPSYPASSSSAAAQHPQETTLQQQDQQSAGGASQAAGITLPPAAAAAFADDKDDNAEL
SPPRCEWEFRLAATVPSTALPGASDAIGSVDFDPTGRLLATGGIARRIRLYDVASLLLVD
SGSDDTIAGPGPAACICVPAKLSSVRWRPAGAAAVGCGDYDGVVTEYDVERGVAAWERDE
HAGRRVWSLDYAPPGGAAAMAASGSDDCTAHVWDPRAPSAGWATARAGGAVLCVEFDPSG
APQLAIGSADRRAVVYDVRALGRGAVASMDGHGRAVTYVRWAGAVAGAARRVVTSAADGT
HRLWEWGGPAAAAAREVRSYSGHASARSFVGMGVWRGAGLVASGSESNHVFVYDLRWAKP
LWVHPFVGGARGPATAGGGGGFVSAVAWRQGGDHDGGGALVAGGSDGVLQMFKCHRRKAA
GDGDDASLLM
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacccctcttatccggcctcgtccagcagcgccgccgctcagcatccccaagag
acgaccttgcagcagcaagatcagcaatccgccggaggagccagccaggccgccggcatt
actctcccccctgctgcagctgcagcgttcgccgacgacaaggacgacaacgccgagctg
tcgcctccgcggtgcgaatgggagttccggctggcggccaccgtgccgtccaccgccctg
ccgggggcgtccgacgccatcggcagcgtcgacttcgaccccaccggccgcctcctcgcc
accggcggcatcgcccggaggatccggctgtacgacgtggcctccctgctgctggtggat
agcggcagcgacgacaccatcgccggccccggccccgcggcgtgcatctgcgtgccggcg
aagctgagcagcgtgcggtggcgcccggccggcgcggcggcggtggggtgcggcgactac
gacggcgtggtgacggagtacgacgtggagcgcggcgtggcggcgtgggagcgcgacgag
cacgcggggcggcgcgtgtggtcgctggactacgcgccccccggcggcgcggcggccatg
gcggcgtccgggtcggacgactgcacggcgcacgtgtgggacccgcgcgccccgtcggcg
ggctgggccaccgcgcgcgcgggcggcgccgtgctgtgcgtggagttcgacccctcgggc
gcgccgcagctggccatcggctcggcggaccggcgcgcggtggtgtacgacgtccgcgcg
ctgggccgcggcgccgtcgcctcgatggacggccacgggcgcgccgtgacgtacgtgcgg
tgggcgggcgccgtggccggggcggcgcggcgggtggtgacgtcggcggcggacgggacc
caccggctgtgggagtggggcggccccgcggcggcggcggcgcgggaggtgcggtcgtac
agcggccacgcgagcgcgcggagcttcgtggggatgggggtgtggcgcggcgcgggcctc
gtggccagcggctccgagtccaaccacgtcttcgtctacgacctccggtgggccaagccc
ctctgggtacaccccttcgtcggaggggcccgcggcccagccactgctggtggtggtggt
gggttcgtcagcgcggtggcgtggcgacagggcggcgaccacgacggcggcggcgcgctg
gtcgccggcgggtcggacggcgtgctccagatgttcaagtgccatcggcggaaggcggcc
ggggacggcgacgacgcttctcttctcatgtga
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