Panicum virgatum (switchgrass): 120697358
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Entry
120697358 CDS
T07260
Name
(RefSeq) long chain acyl-CoA synthetase 1-like
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00061
Fatty acid biosynthesis
pvir00071
Fatty acid degradation
pvir01100
Metabolic pathways
pvir01212
Fatty acid metabolism
pvir04146
Peroxisome
Module
pvir_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
120697358
00071 Fatty acid degradation
120697358
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
120697358
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pvir01004
]
120697358
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120697358
Enzymes [BR:
pvir01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
120697358
Lipid biosynthesis proteins [BR:
pvir01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
120697358
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of breast milk
120697358
Exosomal proteins of breast cancer cells
120697358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
Malic_M
Motif
Other DBs
NCBI-GeneID:
120697358
NCBI-ProteinID:
XP_039836475
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All DBs
Position
3K:complement(8991768..8997513)
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AA seq
670 aa
AA seq
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MEANPKNIFTIKVEDGKPSKDGHPAVGPVFRSVLAKDGFPQLEPDMKTSWDVFRVAADKY
PNNRMLGWRPLKDGVPGPYLWKSYKEVYDEVLQVGSALQQLGVQPGSRVGIYGSNCPQWI
VAMQACNGYSLICVPLYDTLGAGAVDYIIDHAEIDVVFIQDKKIKEILSPNCKSAKRLKA
LVAFTSATREQIKEADEIGIKVYSWNDFLKMGKVNACQPCPPKENDICTIMYTSGTSGQP
KGVMLTHESHALYVKGVNLFMDQFDDKMTTDDVFLSFLPLAHILDRMIEEYFFHKGASIG
YYHGDLNALRDDIQELKPTLLVGVPRVYERIYEGILKAIAELRPLRRVIFNALYNRKLAS
MKSGYSHKTASPFADMLGFRKVKARLGGRLRLLISGGAPLSTEIEEFLRVTTCAYFIQGY
GLTETLGPSTVCYIDDMALVGSVGVPATYTDIRLEAVPEMGYDPLGVPSRGEICIRGKSL
FAGYYKNPELTNEAIVDGWFHTGDIGEMSPDGILKVIDRKKNIFKLSQGEYVAVEYLEKV
YGFPPLVEDIWVYGDSFRSNLVAVVNPHEENTMKWAESNGYKGSFSEICKLEGLKEYILK
ELAAVAQKNKLRGFEYIKGIVLDPIPFDIERDLVTATMKKRRNNMLKYYQSEINTVYKKL
ETQKNAAKAK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaggcaaatccgaagaacatcttcacaattaaagtggaagatgggaagcccagcaag
gacggccacccagcggtagggccagtgttccggagcgtgctggccaaggatggattccca
cagcttgagcctgacatgaaaacatcatgggatgtgttcagggtagcagcagacaagtat
cccaacaaccggatgcttgggtggcgtccacttaaagatggagtgccagggccctacttg
tggaaatcatacaaggaggtctacgatgaagtgctgcaagttggctctgcattgcagcag
ctcggagtgcaaccaggttccagggtcggaatctatggatccaattgccctcagtggata
gtggcaatgcaggcttgcaatggctacagtctaatctgtgtcccactatacgatacttta
ggtgcaggagctgttgactacattattgatcatgctgagattgatgttgtcttcatacag
gacaagaaaataaaagagatactatccccaaattgcaagtctgctaagaggctaaaagca
ttggtggcattcacttcggcaacaagggagcagatcaaagaagcagatgagattgggatt
aaagtgtactcctggaatgatttcttaaaaatgggaaaagttaatgcttgtcaaccttgc
cctccgaaagaaaatgatatatgtactatcatgtatacaagtggaacaagtggacagccc
aaaggtgtgatgctgacccatgaaagccatgcactgtatgtaaaaggagtgaacctcttt
atggatcagtttgatgataagatgacaacagatgatgtctttctatcctttctcccactt
gctcacattcttgaccgcatgatcgaagagtatttctttcacaaaggagcctcaattggc
tattaccacggagatttgaatgccttaagggatgatatccaggagctaaagccaactcta
cttgttggggtaccccgagtgtatgaaagaatttatgaaggtatcttaaaagccattgcg
gaactcagaccacttagaagggtgatttttaatgctttgtacaaccgcaaactggcaagc
atgaaatcaggctactcacacaaaactgcttcaccttttgcggacatgctgggttttcgc
aaggtcaaggcaaggcttggaggtcgtcttcgcttattaatctcaggaggggctccatta
agtactgagattgaagagttcttgagagtgaccacctgtgcatactttatccaaggctat
ggtttaacagaaacactgggacctagcacagtctgctatattgatgacatggccctggtt
ggaagtgttggcgtacctgccacttacactgatatacgactggaagcagtacctgagatg
ggctatgatccacttggtgtcccttcacgaggtgaaatttgcatccgagggaagtctctc
ttcgctgggtactacaaaaatcctgagctcacaaacgaagccattgttgatggatggttt
catacaggcgacattggagagatgagcccggatggaatcctgaaggtaattgaccgaaaa
aagaacatatttaagttgtcacagggggagtatgttgcagttgagtacctcgagaaagta
tatggcttccctccacttgttgaagatatctgggtatatggggacagcttcagatcaaat
ttagtcgcagtagtcaatccacatgaagaaaacaccatgaagtgggcagagtccaacggc
tacaaagggtctttcagtgaaatctgcaaacttgaaggccttaaggagtatatcctgaaa
gagctggcagctgttgcacagaagaacaagctacgaggtttcgagtacatcaaaggcata
gtgttggatcctataccttttgacattgaaagggatctggtgacggcaacaatgaagaag
agaagaaacaatatgctgaaatattaccagtccgagatcaatacagtatacaaaaagctg
gaaacacagaagaatgctgccaaagctaagtaa
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