Panicum virgatum (switchgrass): 120697368
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Entry
120697368 CDS
T07260
Name
(RefSeq) putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
KO
K20827
RNA polymerase II-associated protein 2 [EC:
3.1.3.16
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120697368
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120697368
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
120697368
Protein phosphatases and associated proteins [BR:
pvir01009
]
HAD phosphatases
Fcp/Scp phosphatases
120697368
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
120697368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP2_Rtr1
Motif
Other DBs
NCBI-GeneID:
120697368
NCBI-ProteinID:
XP_039836498
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All DBs
Position
3K:complement(9081167..9084863)
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AA seq
746 aa
AA seq
DB search
MSSTPAAASAAAGPAEAARTVASAVLRVQMALLDGAAASNEALLHAAASALLSRADYDDV
VTERTIADACGNPACPNPLPSAAAAGGPRFHISLREHRVYDLEEARRFCSERCLVASAAL
AASLPADRPFGVPPERLDAVVALVEGAGVGAGEGQGLGFRGADGMKEDEGMKLEIKEKEV
AGAGEVTLQDWVGPSDAIEGYVPRRDRTSDGQKPAVQNKVAGTELSRIENVDSRNAAPGE
DGMTSTSPSVETHVSSEVIAEKMGNMVLSDNTKPPRKETTKTPSKMLKQEEDNNMLSSCI
SDSIAKQLEDVVLEEKRSSNKKTKASKAPSKSQKSKSRKRPGGSDGHEVDFTSTIIIGDA
STNMEQGTMNQYNYLLSSMLTDNYASSSQCAAKDSTQAYTEQLCKEFSETVSTGKDETCD
EKMKHVLKSSMKLPGSKSVMQSVTWADENGSVLESSKLYESPSSSIKQSEEGIDISLRRA
SAEACAAALIEAAEAISSGTSEVDDAVSKAGIIILPDMLHQKQCSNDKSSGGDEEPEIDR
DVLKWPKKTVLLDTDMFEVDDSWHDTPPEGFSLTLSGFATIWAALFGWISRSSLAYVYGL
DGGSVEELLIANGREYPEKIVLKDGHSREIRRALDTCVCNALPVLVSNLRLQIPISKLEI
TLGYLIDTMSFFDPLPSLRSRQWQVVVLVLLDALSIHQLPALAPVVSNSKLVQKMLNAAQ
VSREEYDSMVDLFLPFGRSIQTPMLI
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgagctccacacccgccgcggcgtccgccgccgcgggtccggcggaggcggcgcggacg
gtggcctcggcggtgctccgcgtccagatggcgctcctcgacggcgccgcggcctccaac
gaggccctcctccacgcggccgcctccgcgctcctctcccgcgccgactacgacgacgtc
gtcaccgagcgcaccatcgccgacgcctgcggcaaccccgcgtgccccaacccgctcccc
tcggccgccgcggccggcgggccccggttccacatctccctccgcgagcaccgcgtctac
gacctcgaggaggcgcgcaggttctgctcagagcgctgcctcgtcgcctccgcggccctg
gcagcgtcgctcccggccgatcgccccttcggggtcccgcccgagcggctcgacgccgtg
gtcgcgctcgtcgagggcgccggcgtcggcgccggggagggccaagggttagggtttcgg
ggtgcggatgggatgaaggaggacgaggggatgaagctagagatcaaggagaaggaggtc
gccggggcaggggaggtcacgttgcaggactgggttgggccctcggatgccatcgagggg
tatgtcccgcgccgcgaccgcacttccgatgggcaaaagccagctgtgcagaacaaagtt
gctggaactgagctgtccagaatcgagaatgtggattctaggaatgctgctcctggtgaa
gatggcatgacaagtacatctccatcagttgaaacacatgtgagctcagaagtaatagct
gagaagatgggcaacatggttcttagtgataatacaaagccacctagaaaggagactact
aaaaccccatcgaagatgctgaagcaggaggaagataacaatatgttgtcatcttgcata
tctgattccattgcaaagcagctggaggatgtagttctggaagagaaaaggtctagtaat
aagaaaacaaaagcaagtaaagcgccatcaaagtcacagaagagtaagtctagaaaaagg
cctggtggaagtgatgggcatgaggtggactttacaagtacaatcattattggtgatgcc
tcgacaaacatggagcaagggacgatgaatcagtataactacttgttaagttctatgttg
acagacaattacgcctcatcatctcagtgtgcagcaaaagattcaacacaagcttacact
gaacagctatgcaaagaatttagcgaaacagtgagcactggaaaagatgagacatgtgat
gagaagatgaaacatgtactgaagtcttcaatgaagcttcctgggtctaagagcgttatg
cagtctgtgacatgggcggatgagaatggaagtgttctagaatcaagcaaactatatgaa
agcccttcaagtagtataaaacagtctgaggaaggcatagacatttcactaaggcgtgca
tctgcagaggcttgtgctgctgcacttattgaggcggcagaagctatttcttcaggcaca
tcagaagtagatgacgcagtttcaaaggctggaatcatcatattgcctgacatgcttcac
cagaaacaatgcagcaatgacaaaagcagtggcggggatgaagaacctgaaattgatagg
gatgtcttgaagtggcctaagaagactgtgcttctggatacagacatgtttgaggttgat
gattcttggcatgacacgcctccagaaggtttcagtctaacactgtccggttttgcaaca
atatgggccgcgctatttggatggatctcccggtcttctttggcctatgtgtatgggctt
gatgggggttctgtggaagagttgttgattgccaatgggcgggaatatcctgagaagata
gttcttaaagatgggcactcgagggaaataagaagagctctagacacatgtgtttgcaat
gccctgccagtacttgtatcaaacttgaggttgcagatcccgatttcaaagttggagatt
actctgggctacttgatcgacacaatgtcattttttgacccgcttccttctctacgatca
aggcagtggcaagtggtggttctggtactgcttgatgcgctctccattcaccagcttcct
gcccttgctcctgttgtctcaaattcaaagcttgtgcaaaagatgctgaatgcagctcag
gttagcagagaggagtatgactcgatggttgatctcttcctcccttttggaaggtccatt
cagacgcccatgctgatttag
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