Panicum virgatum (switchgrass): 120697406
Help
Entry
120697406 CDS
T07260
Name
(RefSeq) LEC14B homolog isoform X1
KO
K11801
DDB1- and CUL4-associated factor 11
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120697406
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120697406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EML
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_HPS5
WDR54
PROPPIN
Cytochrom_D1
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_NUP159_NUP214
WD40_like
WD40_2
F420H2_quin_red
Motif
Other DBs
NCBI-GeneID:
120697406
NCBI-ProteinID:
XP_039836568
LinkDB
All DBs
Position
3K:9673399..9680819
Genome browser
AA seq
468 aa
AA seq
DB search
MRGVRRSTRGEAPRKADRELDRFAMTNEVFHLTRARSEPCHRTRGAASARGRRPFSTFGL
MSARESGRTGGAGFSLADRAYVGSRHIPTKGPWIVDEVDSEAYVSQFSADGSLLVAGFRG
SRIRVYNADRGWRIHKDISCRSLQWTVSDIALSPDQQFLAYASLSPIVHIVNVQSSGKES
HANVNEIHEGLHFTSDENAYEDFGIFSVKFSKDGKEVVIGNNERSIYVYDLAANKVSVRI
RAHTDDVNAVTFADESGNLLYSGSDDSLCKVWDRRCLAGEKSAGILTGHLDGVTFIDSRG
DGRYFISNCKDQRIKLWDIRKMSSVVKVRPVRIVDWDYRWMPFPSEAQHVKHPNDQSLAT
YRGHSVLQTLVRCYFSPMHSTGQRYIYTGSSDKSVHIYDVVSGKTVERLSWHSSVIRDCT
WHPCYPTIVTSSWDGYVARWEASGDENSLADEQRASPYFQPYGDPFMM
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggagtacggcggagtactcgcggggaggcgccccggaaggcagaccgcgagttg
gaccggttcgccatgaccaacgaggtgttccacctcaccagggcccggtcggagccctgc
caccggactcgcggtgcggcttccgcccgcgggaggaggcccttctcgactttcgggctc
atgtcggcgagggagtctggccgcacgggcggcgccgggttctcgctggccgatcgcgcc
tatgttggcagcaggcacatcccgacgaaagggccgtggatcgtcgacgaagtggacagc
gaggcctacgtttcgcagttctctgctgatgggtcgttgctcgtcgctgggtttcgggga
agccgcatcagagtttacaatgccgatagagggtggaggattcataaggatataagctgc
agaagtctgcagtggacagtttcagatattgctctttcaccagatcaacaattccttgcc
tatgcaagtttgtcacctattgttcacattgtgaatgtgcagagttctggaaaggaatca
catgctaatgttaatgaaattcatgagggattgcatttcaccagcgatgaaaatgcctat
gaggactttggaatattttctgttaaattctccaaagatggtaaagaagttgttattggg
aacaatgaaagatcaatatatgtttatgaccttgcagcaaataaagtgtcagtccgcatc
cgtgctcatactgatgatgtcaatgcagttaccttcgctgatgaaagcggcaatttgttg
tactctgggagtgatgatagtctctgtaaggtgtgggacaggcgttgccttgctggggaa
aaatcagccggtattttgacaggtcatttagatggagttacatttattgatagccgtggt
gatgggcggtatttcatctccaattgcaaggatcagagaatcaaactttgggacatcagg
aaaatgtcttctgtcgtgaaagttcgcccagtgagaatagtggactgggactataggtgg
atgccattcccatcagaagcacaacatgttaagcatccaaatgatcagtctttggccaca
tacagaggtcattcagttctgcaaacacttgtccgttgctacttctctcctatgcacagc
acgggccagaggtacatatacacaggatccagtgacaagtctgtacatatttatgatgtg
gtaagcgggaagaccgttgagaggctctcatggcatagctcagtcatcagagactgcacc
tggcatccatgctacccaacgatcgtcacctcatcctgggatggttatgttgcccggtgg
gaggcctcaggtgatgaaaatagccttgccgatgagcagagggcaagcccttacttccag
ccatacggtgatcccttcatgatgtag
DBGET
integrated database retrieval system