Panicum virgatum (switchgrass): 120697410
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Entry
120697410 CDS
T07260
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
pvir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120697410
09124 Replication and repair
03420 Nucleotide excision repair
120697410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120697410
03036 Chromosome and associated proteins [BR:
pvir03036
]
120697410
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120697410
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120697410
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120697410
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120697410
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120697410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
NAMPT_N
Motif
Other DBs
NCBI-GeneID:
120697410
NCBI-ProteinID:
XP_039836576
LinkDB
All DBs
Position
3K:complement(9710600..9717462)
Genome browser
AA seq
758 aa
AA seq
DB search
MRFDLDGMPVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTAALISLITSYS
LANPSRPLRLIYCTRTVHEMEKTLAELRLLFAHLPPAASRSLLALGLSSRKNLCVHPQAS
AAAARDSVDTACRRLTASWVRERAASDPESTPLCEFYETFDRAAAGGDLASLMPPGVYTL
ADLRALGRQRRICPYFLARQMVKYANVVVYSYQYLLDPKVASIVSREMQKECVVVFDEAH
NIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLAQRGN
LPISDAWLANPALPDDILKEAVPGNIRRAEHFLAVLRRLVRFLDGRLETENVENEMPVAF
VASIHSQAGIDQKMLRFCYDRLHSLMMTLEITDKDEFMHIQTICDFATLIGTYTRGFSII
IEPYDERMPDIRDPVIQLSCHDASLAVRPVFDRFETVVITSGTLSPIDLYPRLLNFNPVI
SRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVC
FFVSYSYMDGIVNSWHEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAVFF
SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDAL
RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIA
REFLRRMAQPYDKMGSGGKKTLLTEEDLQNMAEDAMEM
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgcggttcgacctggatggcatgccggtgcacttcccatacgcggcgatctacccggaa
cagcacgcgtacatgggggagctcaagcgcgccctcgacgcgcgcggccacgcgctgctc
gagatgcccacgggcaccggcaagacggcggcgctcatctccctcatcacctcctactcc
ctcgccaacccgtcccgcccgctccgcctcatctactgcacgcgcaccgtgcacgagatg
gagaagaccctcgccgagctccgcctcctcttcgcccacctgccccctgccgcctcccgc
tccctcctcgcgctcggcctctcctcgcgtaagaacctctgcgtccacccgcaggcatcc
gccgcggcggcccgggactccgtcgacaccgcgtgccgacgcctcacggcctcctgggtc
cgcgagagggccgcatccgacccggagtccacgccgctgtgcgagttctacgagacgttc
gaccgcgccgccgccggaggggacctcgcctccctcatgccgcccggggtgtacaccctc
gctgacctccgcgcgctgggtaggcagcggcggatctgcccctacttcctcgccaggcag
atggtcaagtacgccaatgttgtggtctatagctaccagtatctgctcgaccccaaggtg
gccagcattgtgtcaagggagatgcagaaggagtgcgtggtcgtgtttgatgaggctcac
aacattgacaatgtatgcattgaggcactgagcgtcagcatccgcaagcagacgctggaa
ggcgctgagcggaacctgcggcgtatctcgcaagagattgacaggttcaaggccactgat
gccaataggcttcgtgctgagtacaacagactggtggatgggctggcgcagaggggaaat
ctaccaatatcggatgcttggcttgccaatccggctctgcctgatgacattctgaaggaa
gctgttcccggaaacataaggagggctgagcatttccttgctgtattgcggcggcttgtg
agattcctcgatggacgactggaaacagaaaacgttgagaatgaaatgcccgttgccttc
gttgcgtcaatccactcccaggctggaatcgaccagaaaatgctcaggttttgttatgac
cggctacactccttaatgatgacactagagataaccgataaagatgagttcatgcacatt
cagaccatctgcgactttgccacattgattggaacttacacacgaggcttttccataata
atagaaccatatgacgaaagaatgcctgacattcgtgatcctgtgattcagctaagctgt
catgatgcttcactcgcagtaagacctgtttttgatcgttttgaaacagttgtgatcact
tctggaactctcagcccaattgatctttatcctcgtctcttgaattttaatcctgttata
agcagaagtttcacaatgtccttaacaagggattgtatttgtcccatggtcttgactcga
ggaagtgatcagctacctgttagtacaaagtttgatatgcgtagtgatcctggtgtggtg
aggaattatggccgcctcttgctggaaatggcttctgctgttccagatggcatagtttgc
ttttttgtcagttactcctatatggatggtattgtcaacagctggcacgaaatgggaatt
ctgcaggacatcatgcaacataaattagtattcatcgaaactccagatgtcgtcgagaca
actttggctcttgataactacagaaaggcgtgtgactgtggaagaggtgctgttttcttc
tctgttgccaggggcaaagttgctgaaggtattgattttgaccgacactatggcagactt
gttatcatgtttggtgttcctttccagtacacacttagccggatattgcttgctagattg
gagtacctaagagagactttccagataaaagagggcgacttcctgacatttgatgctttg
aggcaagcggcccaatgtgttggccgtgtgattcgctccaaagcagactatgggatgatg
atatttgctgacaagaggtacagtcggcatgataaacggtctaaattgcctgggtggata
ctgtcacacttgcacgatgctcacctaaacctgagcaccgatatggctctgcatatagct
cgagagtttctccggaggatggcacagccatacgacaagatggggagcggcgggaagaag
acgctcctgaccgaggaggacctgcagaatatggcagaggacgcaatggagatgtga
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integrated database retrieval system
