Panicum virgatum (switchgrass): 120697434
Help
Entry
120697434 CDS
T07260
Name
(RefSeq) syntaxin-52-like
KO
K08503
syntaxin of plants SYP5
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
120697434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120697434
Membrane trafficking [BR:
pvir04131
]
SNARE
SNAP-25[C] (Qc)
STX8
120697434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNARE
STX6_10_61_N
DUF5345
YjcZ
DUF2721
V-ATPase_su_f
FAM76
Motif
Other DBs
NCBI-GeneID:
120697434
NCBI-ProteinID:
XP_039836614
LinkDB
All DBs
Position
3K:complement(9885487..9889366)
Genome browser
AA seq
231 aa
AA seq
DB search
MASSSDPWVKEYNEASRLADDISSMIADRGSLPQSGPEIMRHTSAIRRKITILGTRLDSL
ESLLARIPPKSITDKEMHKRQDMLSNLKSKAKQMATSFNMSNFANREDLLGQSKKADDIS
RVAGLDNQGIVGLQRQIMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLEDHV
DVTNSRLQRVQKRLAILNKRTKGGCSCMCLLLSVVAIVILVVIAWLIVKYA
NT seq
696 nt
NT seq
+upstream
nt +downstream
nt
atggcatcatcttcggacccatgggtgaaagagtacaatgaagcatccaggcttgctgat
gacatcagttccatgattgctgatagaggatctcttccgcaatcaggcccagaaattatg
cggcatacttcagccatccggagaaaaataactattcttgggactagactggatagcttg
gagtcattgctggccagaattcctccaaagtcaatcactgacaaggagatgcataagcgc
caagacatgctttccaatttgaagtctaaagcaaaacagatggcgacaagtttcaacatg
tcaaactttgctaacagggaggatcttcttggacagagtaaaaaggcagatgatataagc
agagttgctggcttagacaaccaaggaattgttggccttcagagacaaattatgaaagag
caagatgagggccttgagaagctggaagagacagtgctgagcacaaagcatattgcctta
gcagtcaatgaagaacttaccctgcacacacgattgatagatgaccttgaagatcatgtt
gatgttacaaactcgcgtcttcagcgtgtgcaaaagagacttgcaattctgaacaagcgc
accaaaggtggctgctcgtgcatgtgcctgctgttgtcggttgttgccattgtgatcctc
gtggtcattgcttggcttatcgtcaagtacgcgtaa
DBGET
integrated database retrieval system
