Panicum virgatum (switchgrass): 120697443
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Entry
120697443 CDS
T07260
Name
(RefSeq) probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120697443
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120697443
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120697443
03036 Chromosome and associated proteins [BR:
pvir03036
]
120697443
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
120697443
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
120697443
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
120697443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_6
EF-hand_1
EF-hand_7
EF-hand_5
EF-hand_8
EF-hand_13
SPARC_Ca_bdg
IGFBP
Motif
Other DBs
NCBI-GeneID:
120697443
NCBI-ProteinID:
XP_039836625
LinkDB
All DBs
Position
3K:9942747..9948074
Genome browser
AA seq
487 aa
AA seq
DB search
MSTASGDGADAGGDGASSAVTAPAGRRIPPASSMPWVRNLRRFVGTGAGLGSEALMELET
KRILLEIFKERQRKSAEAGSIPSFYKKKPEEGSISSRVQRLAKYRFLKKQSELLLNADDL
DAMWVCLRENCVIDDATGAEKMNYEDFCHIATVCTEQIGQKCKRFFSPSNFMKFEKDDSG
RIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPNLAQLRDMPTQ
FVQMYCRIAARKFFFFCDPHRRGKACIKKVLLSNCLQELMELHQESEEEVTDTEQAENWF
SLTSAQRICDMFLALDKDQNGTLSKQELKEYADGTLTEIFIERVFDEHVRRSKVGGGNSR
EMDFESFLDFVLALENKDTPEGLTYLFRCLDLNGRGFLTTADIHTLFRDVHQKWIEGGNY
ELCIEDVRDEIWDMVKPADPLRISLQDLLSCKQGGTIASMLIDVRGFWAHDNRENLLQEE
EEQVEEA
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgcctccggcgacggcgcggacgccggcggcgacggggcctcctcagcggtg
acggcgcccgccgggaggcggatcccgccggcctcgtcgatgccgtgggtccgcaatctc
cgccgcttcgttggcacgggcgccggcctcggatccgaggccctcatggaactggaaaca
aagaggatattgttggagatcttcaaggagcggcagcgaaagagtgctgaagctggttcc
atcccaagtttttacaagaagaaacctgaagaaggatccattagctctagagttcagagg
ttggccaagtacaggtttctgaagaaacaatcagaacttctgttgaatgctgacgatctt
gatgccatgtgggtttgtctaagagaaaattgtgttattgatgatgctactggtgctgaa
aagatgaattatgaagacttctgccatatagccacagtctgcacggagcagattggtcag
aaatgcaaacgtttcttcagcccttcaaactttatgaagtttgagaaggatgattctggg
aggattgccatcctaccattttatctctacgttatgcggacggtctctcttactcaagca
agaattgacatgagtgaactcgatgaagattctgatggtttccttcagcctcatgaaatg
gaggcatatataagaggactcatccccaatttggcacaattgcgtgacatgcccacccaa
tttgttcaaatgtactgccgcatagctgcacgcaagttctttttcttctgtgatccacac
agacgagggaaagcatgcataaagaaagtcttgctgagcaattgtctccaggagctaatg
gaactacatcaggaaagcgaggaagaggtaactgacaccgagcaggcagaaaattggttt
tccttaacttcagctcagcgcatatgtgatatgtttcttgcactggataaggaccaaaat
ggtaccctgagcaaacaagagctcaaagaatatgcagatggcacgttgactgagattttc
attgaaagagtttttgatgagcatgtccgccggagcaaagttggaggtggaaacagtcgt
gagatggatttcgaaagcttccttgattttgttttggctctagaaaacaaagatacccct
gaaggcttgacatatttatttagatgccttgatctgaatggaagggggttcctcacgact
gcagatatccatactctgtttagagatgtacaccagaaatggattgagggtgggaactat
gagctttgcattgaagatgtgagggacgaaatctgggacatggtgaagccagcagatcct
ctcaggatctcgctacaagatcttctttcatgcaagcaaggcgggactatcgccagcatg
cttatagatgtgcgtggcttctgggcccatgacaacagggagaaccttctccaggaagag
gaagagcaagtggaagaggcatga
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