Panicum virgatum (switchgrass): 120697480
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Entry
120697480 CDS
T07260
Name
(RefSeq) U1 small nuclear ribonucleoprotein A-like
KO
K11091
U1 small nuclear ribonucleoprotein A
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120697480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120697480
Spliceosome [BR:
pvir03041
]
Complex A
U1 snRNP components
U1 snRNP specific factors
120697480
Complex B
120697480
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Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_10
RRM_YTH1
RRM_occluded
DUF4523
xRRM
Motif
Other DBs
NCBI-GeneID:
120697480
NCBI-ProteinID:
XP_039836665
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All DBs
Position
3K:10585501..10589130
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AA seq
252 aa
AA seq
DB search
MSGEAPAVGGGGGEANGIPPNVTIYINNLNEKIKLDELKKSLNAVFSQFGKILDVLAFKT
LKHKGQAWVVFEDVASATEAIKRMQDFPFYDKPMKIQYAKTKSDIVSKADGTFVPRERRK
RVDEKPEKKQKREQHHDASQIGMGVHAYPGVYGAPQLTQLPVAGGQRVMMPEIIVPNNIL
FVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEAQATAAMTHLQGFKIS
KENQMVITYAKK
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgagcggagaggcgccggccgtcggtggcggcggaggggaagcgaacggcatcccaccg
aacgtcaccatctacatcaacaatctcaacgagaagatcaagctcgatgaacttaaaaag
tccctcaacgctgttttttcccagtttgggaagattcttgatgtgcttgctttcaagact
ctgaagcataaaggccaagcatgggttgttttcgaagatgttgcatcagcaactgaggct
ataaagaggatgcaagactttcccttctacgacaaacctatgaaaattcaatatgccaag
accaaatcagatattgtatcaaaagctgatggcacctttgtccctcgagaaagaaggaag
agggttgatgaaaaacctgaaaagaagcagaagcgcgagcagcaccatgatgctagtcaa
attggcatgggtgtacatgcctaccctggtgtttatggggctcctcagctcacccagtta
ccggtagctggaggacagagagtcatgatgccagagattattgtaccaaacaacatcctc
ttcgtccaaaatctgccacacgagacaacccccatgatgctgcaaatgctcttctgccag
taccctggcttcaaggaggttcggatggttgaggcaaagcctgggatcgcttttgtggag
tatggagacgaggcgcaggccaccgctgccatgacccatcttcaaggctttaagatttca
aaagagaaccagatggtcatcacttacgcgaagaagtag
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