Panicum virgatum (switchgrass): 120697509
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Entry
120697509 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase UPL6-like isoform X1
KO
K10589
ubiquitin-protein ligase E3 C [EC:
2.3.2.26
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120697509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120697509
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
120697509
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
HECT type E3
120697509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
IQ
Motif
Other DBs
NCBI-GeneID:
120697509
NCBI-ProteinID:
XP_039836696
LinkDB
All DBs
Position
3K:10842806..10856331
Genome browser
AA seq
1027 aa
AA seq
DB search
MFFSGDPSARRRVDLGGRSSKERDRKVLLEQTREERRRRQGLRLQNSSATKIQKFFRGKK
ALELARSEIRKNFCSTFGEHCEKIDWNIFGTNSDFLRQLLFFFNANEDNDVSILCQVCNL
LLQYVKRGGDTVTLFAGVNDSSQQPLVAHRVKKLALICVQAVYQKRHDWGSQLLTAPVST
SVPSVSLLETVACLINPKLPWNCKVVGYLQRRKIYCLFRGIIISVPQKDRNFGQFDSASA
LEQVLMLVASHVGHHPCCCPVVDPRWSFSSQLLSIPFLWHRLPQLKKVFTVNGISKYYIH
QIACFLPSLADVLPNDISVNHPGYACVLANVLEASTSTLSDANFASDTAADIIAVSTSLL
DTLPAVTSPTERADDDDEMPMDVDVKNGLDVDLERQITTAIDSKLLQHLVNALFRGRLST
DHSDLSAPSDAEVDAVGSICAFLHVTFNTFPLERIMTVLAYRTEIVPALWNFIKRCHENR
RWPYFSKFASSLPADAPGWLLPMSVFCPIYKHMLKIIDNGEFYEQEKPLSLNDLKSLVLI
LKQALWQLLWVIPSSSTLKVAPNPSGLKKLSVENVKTRARVGLSELLTQLQDWNSRLPFT
SASDFYSQEATSENFVSQAILGNTRASEIIKLAPFLAPFTSRVKIFTSQLSSSRQSASHS
ALTRHRFKIRRNRLLEDAFDQLSLLSEEDLKGPIRVSFINEHGEEEAGIDGGGIFKDFME
NITRAAFDVQYGLFKETADHLLYPNPASGLVHELHLQYFHFLGSLLGKAMYEGILVDLPF
ATFFLSKLKQKYNFLNDLPSLDPELYRHILFLKHYNGDISELELYFVIVNNEYGEQCEEE
LLPGGRDMRVTNDNVITFIHLVANHRLNYQIRAQSTHFLRGFQQLIPKDWIDMFNEHEIQ
VLISGSLESLDIDDLRSNTNYSAGYHPDHEVIEMFWEVLKSFSSDNQKKFLKFVTGCSRG
PLLGFQYLEPKFCIHRAGVPGMEEHADRLPTSATCMNLLKLPPYKTKEQLQMKLLYAINS
EAGFDLS
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgttcttctccggtgacccgtcggcgcggaggcgggtggacctcggcgggcggagcagc
aaggagcgcgaccgcaaggtgctgctcgagcagacgcgcgaggagcggcgccgccggcag
ggcctccgcctccagaactcatccgccaccaagatacagaaattcttcagaggtaagaag
gctttggaactggcacgttcagaaattcggaagaacttttgctctactttcggggagcat
tgtgagaagattgactggaacatctttggcactaattctgactttcttcgtcaattgctg
tttttcttcaatgcaaatgaagacaatgatgtttctatactttgtcaagtctgcaatttg
ctgctacaatatgttaaacgtggtggagatactgtaactctctttgctggtgtaaatgac
tcctcacagcaaccacttgttgctcacagagtaaaaaaacttgcactcatctgtgtgcaa
gcagtctatcaaaagaggcatgattggggtagccaacttttgacagcacctgtaagcaca
tcagtgccttctgtctcgttactagaaactgtagcttgcttaataaatcctaaacttcca
tggaactgcaaagtagttgggtatcttcagcggagaaagatctattgcttattccggggc
attattatatctgtaccgcaaaaggacagaaattttgggcaatttgatagtgcatctgcg
ctggaacaagttctcatgcttgttgcttcacatgttggccatcatccttgttgttgtcca
gtagttgatccaaggtggagtttctcctctcagcttctgtccatcccatttctatggcat
cgtttgccgcaactcaagaaggttttcacagttaatggaatcagcaaatattatatccat
caaatagcctgctttttgcccagtcttgctgatgttcttccaaatgatatatcagttaat
catccaggatatgcgtgtgtccttgcaaatgttcttgaagcttcaacctcgactttgtcc
gatgcaaattttgcttctgacacagcagctgacatcatcgccgtttctacgtcattgtta
gacacgttgccagcagtcacgtcacctacggaaagggcagatgatgatgatgagatgcct
atggatgtcgatgttaaaaatggtcttgatgttgatttggaaagacagataactacagca
attgattcaaagctacttcaacatttggtgaatgcactcttcagaggtagattaagcaca
gaccattctgatctttctgcaccgtcagatgctgaagtggatgctgtaggatctatttgt
gcttttcttcatgtcacattcaacacattccctctagagcggattatgactgtgctggcg
taccggactgaaattgttcctgcactatggaattttataaaacgatgccatgaaaaccga
agatggccatatttttccaagtttgcatcttcattacctgcagatgctcctggttggctc
ctgcccatgtctgtattctgtcccatatacaagcacatgttgaagatcattgataatggg
gagttctatgaacaggagaaacctctttcacttaatgatttgaagtccctggttctcatt
ttaaaacaggcattatggcaacttctgtgggttattccttcctcttctactctgaaagtg
gcacccaacccttcaggcctcaaaaaattgtcagtggagaatgtcaaaaccagagctagg
gttgggttatctgaactactcacacagttgcaagactggaacagccgactcccgttcact
tctgcaagtgatttctattctcaagaagcaacaagtgaaaattttgtgtctcaggcaata
cttggcaatactcgagcatcagagattataaagcttgctcctttcttggcgccatttact
agtagagtcaaaatattcacttcccaattgtcaagttctagacaatcggcatcacattct
gcattgacaagacatcggttcaaaataagaagaaatcgacttctggaagatgcttttgat
cagctaagtttgctttctgaagaagatctcaaaggaccgattcgagtgtcatttattaat
gagcatggtgaggaagaggctggaattgatggtggtggaattttcaaagatttcatggag
aatatcactcgagctgcttttgatgtacagtatggtctcttcaaggagacagctgatcat
cttctgtacccaaaccccgcatcaggattggttcatgaactacacctgcaatatttccat
tttcttggaagtctccttggaaaggcaatgtatgagggcatacttgtggacttgccattt
gcgacgttcttcttgagcaagttgaaacaaaagtacaattttttaaatgatcttccttca
ttggatccagaattatatcgacatattctatttttaaagcattacaacggtgatatctca
gagctggaactgtattttgtcattgtgaataatgaatatggtgaacagtgtgaagaagaa
cttctccctggtgggagagacatgcgtgttactaatgataatgttattacttttatccat
cttgttgccaatcatcggttaaactaccagattcgtgcacaaagtacacacttcttgcga
ggttttcaacagcttataccaaaagactggattgatatgttcaatgaacatgaaattcag
gttctcatatctggctctttggaaagcttggatattgatgacttgcggtcaaacaccaac
tattctgcaggatatcatccggaccacgaggtcattgagatgttttgggaagtcctgaag
agcttcagttcagacaatcagaaaaaatttctcaagtttgtgaccggatgttctcgtggt
ccactccttggattccagtacctcgaaccaaaattttgcattcatagagctggtgttcca
ggcatggaggagcatgctgaccgcctgcctacatcggctacttgcatgaacctcctgaag
cttcccccctataaaaccaaggagcagttgcagatgaagctgctgtacgccataaattca
gaagctggttttgatcttagttga
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