Panicum virgatum (switchgrass): 120697580
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Entry
120697580 CDS
T07260
Name
(RefSeq) serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like
KO
K11584
serine/threonine-protein phosphatase 2A regulatory subunit B'
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120697580
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120697580
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120697580
03036 Chromosome and associated proteins [BR:
pvir03036
]
120697580
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
120697580
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
120697580
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
120697580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B56
Motif
Other DBs
NCBI-GeneID:
120697580
NCBI-ProteinID:
XP_039836785
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All DBs
Position
3K:complement(11607159..11613305)
Genome browser
AA seq
483 aa
AA seq
DB search
MWKQFLGKISQKSPKSGSGGRGSLPQKCPPSCGTNGAEAELRASPPPQASAGAAVPGSET
REDVFLRKLNICCVVFDFAAERGRDSPEVERKRQVLVSLVDCVSVAEEPLTEAMISACVR
MFAINLFRVFPPKLHSGGAIDEDEPFFDPSWYHLQVVYELLLRFVMSPVVDVKVARKYMD
NSFISRLLDLFDSDDPRERDCLKTVLHRIYGKFMGNRPFIRKAVSNIFYRFVFETDHYNG
IAELLEVFGSVISGFAKPLKEEHKLFLWKALIPLHKPKTVGVYLPQLTYCITQFIEKEPK
LTGTVIRGLLKYWPVTNSQKEMMFLGELEEVLELTEMADFQKCVVPLFCRIAQCLNSSHF
QVAERALFLWNNKHLFDLISQNRQVILPIIYPALERNARWHWNQSVLNVTMNVRKMFFDM
DERLLLACEANFQEEEKRRAASEERRRLVWERLERNATFQSVTGDIGFAVPPTSAPLVAP
AMT
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtggaagcagtttcttggcaagatctcacagaagtcgcccaaatctggcagcggcggc
cgaggctcgctgccgcagaagtgcccgccgtcgtgtggaaccaatggggctgaagcggag
ctgagagcgtcgcctccgccgcaggcgtcggccggcgccgcggtgcctgggtcggagacc
agggaggacgtgttcctccgcaagctcaacatctgctgcgtggtgttcgacttcgccgcc
gagcgggggagggactcgccggaggtggagaggaagcggcaggtgctcgtgtccctcgtc
gactgcgtctccgtggccgaggagccactcacggaggcaatgatctcggcctgcgtccgc
atgttcgccatcaacctcttcagggtcttcccgcccaagctacactccggcggcgccatt
gatgaggacgagccattctttgacccctcctggtaccacctgcaggtcgtgtacgagctg
ctgctccggtttgtgatgtcaccggttgtcgatgtgaaggtagctaggaagtacatggac
aactcattcatctctaggcttctggacctgttcgattctgatgaccctagggagagggat
tgtttgaagacagtcttgcacaggatatatggaaaattcatgggcaataggccgtttatc
cgcaaggcagtgagcaacatcttctacaggtttgtgtttgagacggatcattacaatggg
attgctgagctgttggaggtgtttgggagtgtgattagtggtttcgcaaagccgctgaag
gaggagcataagttgtttctgtggaaggcgttgattccacttcacaagccaaagacagtt
ggagtgtatttgccacagttgacatactgcattacacagtttattgagaaggaaccaaag
ctcacagggactgttattagaggcctcctgaagtactggccggtgacgaacagtcagaag
gagatgatgttcttgggagagttggaggaggtgctggagttgacagaaatggctgatttc
cagaagtgtgtcgttcccttgttttgcaggattgcgcaatgcctgaatagctctcatttt
caggttgctgaaagggccttattcctgtggaataataaacatttgtttgacctgatttcc
caaaaccgacaagttatcctgccaatcatatatcctgctctggaaaggaacgctcgttgg
cactggaatcaatcagttctaaatgtaacaatgaatgtgaggaaaatgttctttgacatg
gacgagagattgcttctggcttgtgaggccaatttccaagaggaggaaaagaggcgagct
gcatctgaggaacgaagaaggcttgtatgggagcgcctcgagaggaatgccacatttcaa
tcagtaaccggagacataggctttgcagttcctcctacatctgctcctctggtcgctccc
gctatgacatga
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