Panicum virgatum (switchgrass): 120697696
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Entry
120697696 CDS
T07260
Name
(RefSeq) RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
KO
K03093
RNA polymerase sigma-I factor
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120697696
Transcription machinery [BR:
pvir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
120697696
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
HTH_11
GerE
Motif
Other DBs
NCBI-GeneID:
120697696
NCBI-ProteinID:
XP_039836927
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Position
3K:complement(13766747..13769413)
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AA seq
486 aa
AA seq
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MTSTVTTPSRPLAAGCRRAAGPRRSGPAVLSLKGPRRRAPSTSCSAVASPEKRRTAAKLP
PPQRPSRAAAAEEKERTDYNEVAAALESIYKLSPAVVEEKHGDDEGKRKGRKKGKGGVGR
STVIVRSRRRRRGRRMDLGKRVEMKSRGDDAGGGRQDVEREFEEMLLREHSVSTDMGSLD
WKRMKIPPVLSSAQSARLFKTMQPMKAIFEVQESLREDLQRDPADAELAEATGMTVQQLR
RRLDVGRAARNKLIKHNLRLVLYAINKYYPDMASDERFDDLCQAGANGLITAIDRFEPKR
GFRISTYALFWIRHSIVRAMTLSNFTRFPFAMESERQEINKAREELAFELGRAPTDEEVI
GRVGISQERYRDVLRMTRPTYSLHSRNRVTQEELINEVTDDDAIGVDAGKHNTLLRLAID
DLLDSLKPKESLVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVD
YLRRYM
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccaccgtgaccacgccgagccggccgctcgccgccgggtgccggcgcgcggcc
gggccgcggcggtccggccccgccgtgctctcgctcaagggcccgcggcggcgggcgccg
tccacgagctgctcggcggtcgcgtcgcccgagaagcggcgcacggcggccaagctcccc
ccaccgcagcggccgtcgagggccgcggcggcggaggagaaggagaggacggactacaac
gaggtggcggccgcgctggagagcatctacaagctcagccccgccgtggtcgaggagaag
cacggcgacgacgagggcaagaggaagggcaggaagaaggggaagggcggagtgggcagg
agcacggtgatcgtgaggagccggcggaggcggcgcgggaggaggatggacctggggaag
agggtggagatgaagagcaggggggacgacgccggcggcgggcggcaggacgtggagcgg
gagttcgaggagatgctgctccgggagcactcggtgtccacggacatgggcagcctcgac
tggaagcgcatgaagatcccgccggtgctcagctccgcgcagagcgcgcgcctcttcaag
accatgcagcccatgaaggcgatcttcgaagtgcaggagagcttgcgggaggacttgcag
agggacccggccgacgccgagctcgcggaggccaccggcatgaccgtccagcagctgcgc
cgccgcctcgacgtcggccgggccgccaggaacaagctcatcaagcacaacctccggctg
gtgctgtacgccatcaacaagtactacccggacatggccagcgacgagaggttcgacgac
ctctgccaggccggcgccaacggcctcatcaccgccatcgaccgcttcgagcccaagcgc
ggcttccgcatctccacctacgcgctcttctggatccgccactccatcgtccgcgccatg
acgctctccaacttcacgcgcttccccttcgccatggagtcggagaggcaggagatcaac
aaagcccgggaggagctggcgttcgagctcgggagggctcccacggacgaggaggtgatc
gggagggtgggcatctcccaggagaggtaccgcgacgtgctgaggatgacgcgccccacc
tactcgctgcactcgcggaaccgcgtgacgcaggaggagctcatcaacgaggtcaccgac
gacgacgctatcggggtcgacgccggcaagcacaacacgctgctccgcctggccatcgac
gacctcctggattcgctgaagcccaaggagagcctggtgatccggcagcggttcgggctg
gacggccgggggaagcgcacgctcagcgagatcgccggcaacctcaacatctcgcgggag
atggtccgcaagtacgagctcaaggccctgatgaagctcaagcaccccacgcgggtggac
tacctgcgcaggtacatgtga
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